Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5901
         (761 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024852-1|AAK66027.1|  257|Caenorhabditis elegans Hypothetical ...   116   2e-26
AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical ...    31   1.2  

>AC024852-1|AAK66027.1|  257|Caenorhabditis elegans Hypothetical
           protein Y71F9AM.6 protein.
          Length = 257

 Score =  116 bits (279), Expect = 2e-26
 Identities = 53/123 (43%), Positives = 77/123 (62%)
 Frame = +1

Query: 211 DDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEA 390
           +DD+  + +S D      F +P  S  ++  +   G PV++ +GF NKG  D+VV+  E 
Sbjct: 37  EDDDLTIGASPDAGLAFHFVQP--SDANVVREFYTGKPVKYLIGFQNKGEKDFVVKYAET 94

Query: 391 SFRYPMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNVQLNYRDASG 570
           SFR+P D++Y++QNFT   YNR V PK+E T  Y F  +E FAGRP GL V ++Y+DA G
Sbjct: 95  SFRFPTDHSYHLQNFTRGEYNRRVAPKEEVTLDYGFYAHETFAGRPVGLVVNVHYQDADG 154

Query: 571 NAY 579
           N +
Sbjct: 155 NVF 157



 Score = 37.5 bits (83), Expect = 0.010
 Identities = 15/25 (60%), Positives = 19/25 (76%)
 Frame = +2

Query: 590 VYNQTLNIVEVSEGLDGETFFLYVF 664
           VYNQT+NI+E   G  GET FL++F
Sbjct: 161 VYNQTINIMEDDSGFSGETGFLFIF 185


>AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical
            protein R10F2.1 protein.
          Length = 2779

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +1

Query: 532  GLNVQLNYRDASGNAYQGSGLQPDT*HCGSIRRSRWRDILLICLPWCWW 678
            G N +++YR  SGN      L PDT   GSI+ + W D  L   P   W
Sbjct: 2260 GENGRVSYRILSGNDLNIVTLNPDT---GSIQLNEWNDAQLDEFPNATW 2305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,465,676
Number of Sequences: 27780
Number of extensions: 309579
Number of successful extensions: 818
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)