Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5899
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi... 35 0.009
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces... 34 0.021
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 33 0.037
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 29 0.61
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.4
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 26 4.3
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra... 25 7.5
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.9
>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
Sec14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 286
Score = 35.1 bits (77), Expect = 0.009
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +2
Query: 248 DDNFLRRFLYARKHDVQQSFELLVRYHQYRRE 343
DD L RFL ARK ++QQS E+ ++ ++R+E
Sbjct: 49 DDATLLRFLRARKFNLQQSLEMFIKCEKWRKE 80
>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 33.9 bits (74), Expect = 0.021
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 10/131 (7%)
Frame = +2
Query: 239 RCQDDNF---LRRFLYARKHDVQQSFELLVRYHQYRREHD--ELWASADGGVLRALADGL 403
+C D+F L RFL ARK V S ++L +R++ + + + G+ +
Sbjct: 45 QCAFDDFDLTLLRFLKARKFVVTDSSDMLANAIVWRQQANLRSIMVRGENGLNQNFVKAS 104
Query: 404 PGVLAQRDRRGRCVLLVFASNW-SPQACSLISVFRALLL-TIERT---LRDIQNQANGYV 568
+ +D++GR ++ + N+ P+ + +AL+L +E L QN A G +
Sbjct: 105 MYFIWGQDKKGRAIVFLNLHNFIPPKNTKDMEELKALILYAMENARLFLDSEQNAAKGVL 164
Query: 569 IIVDWTEFTFK 601
+VD T F+ K
Sbjct: 165 GLVDLTYFSRK 175
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 33.1 bits (72), Expect = 0.037
Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 9/161 (5%)
Frame = +2
Query: 212 LNLALRDKSRCQD-DNFLRRFLYARKHDVQQSFELLVR-YHQYRREHD--ELWASA---- 367
L + D C D D L RFL ARK +V+ + E+ ++ H RE + E+ +A
Sbjct: 110 LRVCFWDAVNCDDPDGLLLRFLRARKWNVEAALEMFMKTVHWRSREMNVGEIVCNADHLD 169
Query: 368 -DGGVLRALADGLPGVLAQRDRRGRCVLLVFASNWSPQACSLISVFRALLLTIERTLRDI 544
D +R L G + + D+ R V + A S SV R + +E +
Sbjct: 170 KDDDFVRQLRIGKCFIFGE-DKHNRPVCYIRARLHKVGDVSPESVERLTVWVMETARLIL 228
Query: 545 QNQANGYVIIVDWTEFTFKQSCSLQAKVLKMMIDCLQDCMP 667
+ ++ D T+F+ ++ LK MI C + P
Sbjct: 229 KPPIETATVVFDMTDFSMS---NMDYGPLKFMIKCFEAHYP 266
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 29.1 bits (62), Expect = 0.61
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 465 FEANTRSTQRPR-LSRCANTPGNPSASARNTPPSAEAHSSS 346
F AN S P +S N P PSA R TPP+ + SS+
Sbjct: 336 FTANRFSPAAPTTVSSERNAPPYPSAPTRPTPPTVQTSSSA 376
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/39 (30%), Positives = 26/39 (66%)
Frame = -2
Query: 453 TRSTQRPRLSRCANTPGNPSASARNTPPSAEAHSSSCSR 337
TR++ ++ ++TP + S+S+ ++P S+ + SSS S+
Sbjct: 139 TRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSK 177
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 239 RCQDDNFLRRFLYARKHDVQQSFELLVRYHQYRREHD 349
RC +NFLR+ L + D S+ L R+ RR D
Sbjct: 1137 RCVPNNFLRKVLPVKTIDTVFSWILNPRFRSKRRSTD 1173
>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
3-phosphatidyltransferase Pis1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/58 (20%), Positives = 27/58 (46%)
Frame = +2
Query: 443 VLLVFASNWSPQACSLISVFRALLLTIERTLRDIQNQANGYVIIVDWTEFTFKQSCSL 616
++ ++ +W P C+++ ++ +LL + +QA + I+D SC L
Sbjct: 42 LISLYFMSWHPNYCTIVYLYSSLLDAFDGWAARKLHQATNFGAILDMVTDRCATSCLL 99
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 25.0 bits (52), Expect = 9.9
Identities = 16/81 (19%), Positives = 37/81 (45%)
Frame = +2
Query: 59 LTKPVMNEYAEYDWKLHQMQNERLCEVTRKRLTDGDRQRALLGLKEAVDSSLNLALRDKS 238
LTK ++ Y + +++E C + +G + L E+V + N +
Sbjct: 1789 LTKRIVTLSDHYRLLEYLLKDESSCSQASQCSENGQVDLSYASLSESVHAFNNRFVAHNV 1848
Query: 239 RCQDDNFLRRFLYARKHDVQQ 301
+ + +NF+R + + H+V++
Sbjct: 1849 QVKWNNFIRNAVMSYVHEVER 1869
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,763,781
Number of Sequences: 5004
Number of extensions: 57449
Number of successful extensions: 178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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