Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5899
(673 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_02_0111 - 11220179-11220322,11220430-11220497,11220611-112206... 36 0.039
01_07_0035 + 40637102-40637197,40638594-40638948,40639664-406397... 35 0.068
03_01_0604 + 4449416-4449766,4450150-4450374 32 0.36
01_01_1135 - 9003823-9004182,9004308-9004367,9004441-9004683,900... 32 0.48
08_02_0290 + 15383473-15383669,15385057-15385267,15386389-153864... 31 0.63
10_02_0157 - 5954439-5954801,5956244-5956270,5956465-5956526,595... 30 1.5
04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508... 30 1.9
02_03_0040 + 14262137-14262182,14262456-14262738,14262824-142629... 30 1.9
12_02_0997 - 25121029-25121126,25121365-25121405,25121565-251218... 29 3.4
07_03_0167 - 14649782-14649864,14649954-14650078,14650357-146504... 29 4.5
05_01_0544 - 4740460-4740493,4742042-4743033 29 4.5
04_04_1624 - 34849385-34849410,34849748-34851052,34852121-348522... 29 4.5
02_05_0237 + 27095817-27097433 29 4.5
02_01_0178 - 1223725-1223736,1223900-1224025,1224404-1224649,122... 29 4.5
08_01_0553 - 4846808-4847029,4847131-4847748 28 5.9
03_04_0092 + 17255548-17256046,17257838-17258262 28 5.9
09_04_0143 + 15056435-15056732,15056808-15057417,15057839-15057917 28 7.8
>01_02_0111 -
11220179-11220322,11220430-11220497,11220611-11220644,
11220735-11220766,11220900-11220959,11221276-11221729
Length = 263
Score = 35.5 bits (78), Expect = 0.039
Identities = 20/61 (32%), Positives = 25/61 (40%)
Frame = -3
Query: 425 PVVPTHPATRRRALVTRPRLPKPTARHVPADIDDNEPKARNSVVRRVYARIKISSKNCHL 246
P PTH A R L T PR P P+ H P R V R+ R++ + L
Sbjct: 38 PRAPTHVALLPRPLYTNPRQPPPSRLHRSPPHPPPPPLRRTHVAARLVERVRRRMSSSRL 97
Query: 245 D 243
D
Sbjct: 98 D 98
>01_07_0035 +
40637102-40637197,40638594-40638948,40639664-40639700,
40639850-40639955,40640086-40640196,40640334-40640468
Length = 279
Score = 34.7 bits (76), Expect = 0.068
Identities = 24/70 (34%), Positives = 38/70 (54%)
Frame = +2
Query: 248 DDNFLRRFLYARKHDVQQSFELLVRYHQYRREHDELWASADGGVLRALADGLPGVLAQRD 427
D+ LRRFL AR H+V+++ +L++ ++RRE + + V L D + D
Sbjct: 35 DNLTLRRFLRARDHNVEKASAMLLKALRWRREAVPGGSVPEEKVQSDLDDD-KVYMGGAD 93
Query: 428 RRGRCVLLVF 457
R GR +LL F
Sbjct: 94 RTGRPILLAF 103
>03_01_0604 + 4449416-4449766,4450150-4450374
Length = 191
Score = 32.3 bits (70), Expect = 0.36
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -2
Query: 474 GDQFEANTRSTQRPRLSRCANTPGNPSASARNTPPSAEAHS 352
G +F + + R+ CAN P PS SAR PPSA S
Sbjct: 44 GGEFGRSVVEAEAERVI-CANCPHRPSRSARPPPPSANVRS 83
>01_01_1135 -
9003823-9004182,9004308-9004367,9004441-9004683,
9005207-9005305,9005807-9005986,9006090-9006164
Length = 338
Score = 31.9 bits (69), Expect = 0.48
Identities = 39/178 (21%), Positives = 74/178 (41%)
Frame = +2
Query: 140 TRKRLTDGDRQRALLGLKEAVDSSLNLALRDKSRCQDDNFLRRFLYARKHDVQQSFELLV 319
T K LT ++Q + L++ + + ++D D RFL AR +VQ++ +++
Sbjct: 13 TEKNLTLEEQQEKINDLRKELGEHSSEEIQD---FLSDASCLRFLRARNWNVQKASKMMK 69
Query: 320 RYHQYRREHDELWASADGGVLRALADGLPGVLAQRDRRGRCVLLVFASNWSPQACSLISV 499
++R + + D V G +D+ GR VL++ S
Sbjct: 70 SAVKWRVSYMPQKINWDD-VAHEAETGKIYRADYKDKHGRTVLVLRPG--LENTTSGKGQ 126
Query: 500 FRALLLTIERTLRDIQNQANGYVIIVDWTEFTFKQSCSLQAKVLKMMIDCLQDCMPVR 673
+ L+ +E+ + + V + D+ +T S KV + ++ LQDC P R
Sbjct: 127 IKYLVYCLEKAIMSLTEDQEKMVWLTDFQSWTLG---STPLKVTRETVNVLQDCYPER 181
>08_02_0290 +
15383473-15383669,15385057-15385267,15386389-15386440,
15386545-15386863,15387022-15387121,15387391-15387657,
15387780-15387857,15387943-15388032,15388119-15388168,
15388267-15388366,15388777-15388875,15389023-15389136,
15389238-15389412,15389726-15390132,15390565-15390639,
15391412-15391438
Length = 786
Score = 31.5 bits (68), Expect = 0.63
Identities = 22/68 (32%), Positives = 38/68 (55%)
Frame = +2
Query: 140 TRKRLTDGDRQRALLGLKEAVDSSLNLALRDKSRCQDDNFLRRFLYARKHDVQQSFELLV 319
T + + D + +RA+ ++ + S NL L DK D + L RFL ARK D +++ ++
Sbjct: 222 TIEDVRDEEEERAVFSFQQELFSR-NL-LPDKHN--DYHMLLRFLKARKFDTEKAIQMWA 277
Query: 320 RYHQYRRE 343
Q+R+E
Sbjct: 278 EMLQWRKE 285
>10_02_0157 -
5954439-5954801,5956244-5956270,5956465-5956526,
5956971-5957592
Length = 357
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Frame = -2
Query: 582 QSTIITYPLAWFWISLSVRSMVR-----SRALKTEINEHA 478
Q TI TYPL+W ISL + S+ R SR L I H+
Sbjct: 284 QCTIATYPLSWSLISLRLSSVKRQERYSSRVLNCSILNHS 323
>04_03_0496 +
16549333-16549465,16549620-16550020,16550412-16550880,
16552038-16552076,16553151-16553272,16553531-16553677,
16554097-16554186,16554274-16554398,16554567-16554772,
16554951-16555075,16555528-16555722,16556295-16556337,
16556762-16557267,16558198-16558570,16559772-16560062,
16560132-16561101,16561196-16561892,16562378-16562658,
16562731-16563400,16563860-16564034,16565103-16565659
Length = 2204
Score = 29.9 bits (64), Expect = 1.9
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Frame = -2
Query: 663 IQSCKQSIIIFNTLACKLHDCLKVNSVQSTIIT-----YPL-AWFWISLSVRSMVRSRAL 502
IQ Q + I TLA +LHDC + + + +T Y + WI LSV + + R L
Sbjct: 526 IQLVSQYLTILGTLALQLHDCGQAREILKSSLTLAKTLYDIPTQIWI-LSVFTEL-YREL 583
Query: 501 KTEINEHA*GDQFEANTRSTQRPRLSRCANTP 406
K NE ++E + RLS ++P
Sbjct: 584 KERENEME-NSEYERKKEDDLQRRLSEAHSSP 614
>02_03_0040 +
14262137-14262182,14262456-14262738,14262824-14262923,
14263027-14263293,14263378-14263455,14263552-14263653,
14263731-14263780,14263864-14263957,14264060-14264161,
14264855-14264960,14265056-14265414,14265572-14265646,
14265890-14265907
Length = 559
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Frame = +2
Query: 194 EAVDSSLNLALRDK---SRCQDDNFLRRFLYARKHDVQQSFELLVRYHQYRRE 343
+AVD+ L + ++ S D + + RFL ARK DV+++ ++ V Q+R+E
Sbjct: 83 QAVDAFRQLLVLEELLPSHHDDYHMMLRFLKARKFDVEKAKQMWVDMLQWRKE 135
>12_02_0997 -
25121029-25121126,25121365-25121405,25121565-25121805,
25121884-25121946,25122719-25122852,25122904-25123006,
25123079-25123281,25123382-25123468,25123886-25124014,
25124241-25124315,25124731-25124816,25124926-25125162
Length = 498
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 359 PTARHVPADIDDNEPKARNSVVRRVYARIKISSKN 255
P+ HV D+ D + K RN+V+ +V+ SKN
Sbjct: 365 PSKSHVEIDVRDIDEKRRNNVIEKVHQSAIEISKN 399
>07_03_0167 -
14649782-14649864,14649954-14650078,14650357-14650400,
14650873-14651003,14652469-14652559,14653335-14653445,
14653623-14653774,14653863-14654067,14654436-14654764,
14654850-14655309
Length = 576
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -2
Query: 429 LSRCANTPGN-PSASARNTPPSAEAHSSSCS 340
L+ C T G+ PS S+ T P+A+ H+ SC+
Sbjct: 74 LTPCLETIGDVPSTSSLQTEPAADHHARSCT 104
>05_01_0544 - 4740460-4740493,4742042-4743033
Length = 341
Score = 28.7 bits (61), Expect = 4.5
Identities = 25/79 (31%), Positives = 38/79 (48%)
Frame = +2
Query: 293 VQQSFELLVRYHQYRREHDELWASADGGVLRALADGLPGVLAQRDRRGRCVLLVFASNWS 472
+Q + L YH +R D + A+A G A + LPG+ R R L + S+
Sbjct: 145 IQPTTALAAYYHYFRGGRDAVVAAAASGDASAEVNLLPGLPPLRVRDIPSFLAI-TSDDD 203
Query: 473 PQACSLISVFRALLLTIER 529
P A ++S F L+ T+ER
Sbjct: 204 PFA-FVLSEFAELIDTLER 221
>04_04_1624 -
34849385-34849410,34849748-34851052,34852121-34852294,
34852386-34852456,34852563-34852618,34853047-34853185,
34853310-34853695,34853801-34853851,34853936-34854021,
34854112-34854553,34856241-34856315,34856457-34856593,
34856679-34856838,34856917-34857012,34857093-34857247,
34857900-34858032
Length = 1163
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 195 RRWIRASTSPYETKADVKMTIF*GDFYTRVNTT 293
RRW+RAS +PY +V + + ++ N T
Sbjct: 797 RRWVRASVAPYAEATNVSRVLVGDEVISQANRT 829
>02_05_0237 + 27095817-27097433
Length = 538
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/60 (33%), Positives = 24/60 (40%)
Frame = -2
Query: 525 SMVRSRALKTEINEHA*GDQFEANTRSTQRPRLSRCANTPGNPSASARNTPPSAEAHSSS 346
SM SRAL H G + E + PRL +PG AS P+ SSS
Sbjct: 4 SMAMSRALAARHRSHL-GHRIEVKSHHASPPRLPLLPRSPGLTLASRPRMLPARPRMSSS 62
>02_01_0178 -
1223725-1223736,1223900-1224025,1224404-1224649,
1224731-1224922,1225059-1225138,1225233-1226826
Length = 749
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 464 SRRTRGAHSARVYPVVPTHPATRRRALVTRPRLPKPT 354
S R AH A + P++P HP L T P L P+
Sbjct: 66 SLRLSSAHVALLLPLLPLHPRLVSPLLATSPHLLPPS 102
>08_01_0553 - 4846808-4847029,4847131-4847748
Length = 279
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 353 LWASADGGVLRALADGLPGVLAQRDRRGRCVL 448
L++S GGV RA G P L +DR G L
Sbjct: 131 LYSSNGGGVARAHGHGAPAPLLDKDRAGELPL 162
>03_04_0092 + 17255548-17256046,17257838-17258262
Length = 307
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 62 TKPVMNEYAEYDWKLHQMQNERLCEVTRKRL 154
T + E E W+ +MQN R E RKRL
Sbjct: 89 TSSLPTETEEERWRRREMQNRRRLEARRKRL 119
>09_04_0143 + 15056435-15056732,15056808-15057417,15057839-15057917
Length = 328
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 336 GGNMTSCGLRQTGACYERSPTGCRVCWHNGID 431
GG+ + C+ CRV WH+GID
Sbjct: 222 GGDAEEIAETECPHCHRMFCASCRVPWHDGID 253
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,561,715
Number of Sequences: 37544
Number of extensions: 409111
Number of successful extensions: 1546
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1546
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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