Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5899
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078785-4|AAC27089.3|  609|Caenorhabditis elegans Hypothetical ...    31   0.56 
U21323-12|AAA62554.2|  354|Caenorhabditis elegans Hypothetical p...    29   2.3  
AL110485-34|CAB60348.3|  397|Caenorhabditis elegans Hypothetical...    29   2.3  
AL110484-29|CAE48674.1|  397|Caenorhabditis elegans Hypothetical...    29   2.3  
AF100306-7|ABB88214.1|  895|Caenorhabditis elegans Hypothetical ...    29   4.0  
Z99942-3|CAB17071.2|  585|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AC006696-7|AAF39988.1|  140|Caenorhabditis elegans Hypothetical ...    28   5.3  
AC006696-6|AAF39986.1|  141|Caenorhabditis elegans Hypothetical ...    28   5.3  
AC006696-5|AAF39987.1|  141|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z35595-5|CAA84636.1|  952|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AF100306-8|ABB88213.1|  860|Caenorhabditis elegans Hypothetical ...    28   6.9  
Z77652-7|CAB01119.1|  341|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U23521-4|AAC46816.4|  389|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U21310-1|AAA62519.1|  997|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>AF078785-4|AAC27089.3|  609|Caenorhabditis elegans Hypothetical
           protein C04E12.4 protein.
          Length = 609

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 20  NTRFNCERPHDSYLTKPVMNEYAEYDWKLHQMQNERLCEVTRKRL 154
           N   + E+P+D+YL K   NE     WK +    E++ E    R+
Sbjct: 115 NVERHSEKPYDAYLHKKDKNEEGSIYWKFNLKSTEKILEKLEIRM 159


>U21323-12|AAA62554.2|  354|Caenorhabditis elegans Hypothetical
           protein C45G9.11 protein.
          Length = 354

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 649 TVNHHFQYLSL*TARLFEGELGPIHYNYVSVGLVLDIPQCAFN 521
           TVNHH+Q + L   R+   ++ PIH    S  L L+ P C  +
Sbjct: 152 TVNHHYQKVVLFRNRMKANKVAPIHTKVQSRHLELE-PLCCLS 193


>AL110485-34|CAB60348.3|  397|Caenorhabditis elegans Hypothetical
           protein Y46G5A.2 protein.
          Length = 397

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +2

Query: 17  ANTRFNCERPHDSYLTKPVMNEYAEYDWKLHQMQNERLCEVTRKR 151
           A   F+ + PH + L+  +  +Y++  +++  + NERLC VT  R
Sbjct: 250 ATILFSWQFPHFNGLSWNLRGDYSKAGYRVMCVTNERLCRVTSLR 294


>AL110484-29|CAE48674.1|  397|Caenorhabditis elegans Hypothetical
           protein Y46G5A.2 protein.
          Length = 397

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +2

Query: 17  ANTRFNCERPHDSYLTKPVMNEYAEYDWKLHQMQNERLCEVTRKR 151
           A   F+ + PH + L+  +  +Y++  +++  + NERLC VT  R
Sbjct: 250 ATILFSWQFPHFNGLSWNLRGDYSKAGYRVMCVTNERLCRVTSLR 294


>AF100306-7|ABB88214.1|  895|Caenorhabditis elegans Hypothetical
            protein T24C4.6b protein.
          Length = 895

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 30/106 (28%), Positives = 44/106 (41%)
 Frame = +2

Query: 263  RRFLYARKHDVQQSFELLVRYHQYRREHDELWASADGGVLRALADGLPGVLAQRDRRGRC 442
            RRF+  R    +    LL  YH Y  +H  +WA A+        DG       RD  G  
Sbjct: 752  RRFINYRSF--RPILRLLPLYHAYASQHWAVWALAN----LTTTDGEKYCAYVRDEGGVP 805

Query: 443  VLLVFASNWSPQACSLISVFRALLLTIERTLRDIQNQANGYVIIVD 580
            +L    SN    A +   + R L  T+   +R+++N+ N   I  D
Sbjct: 806  LLEELVSN----AITTTDI-RTLANTVLENIRNVENKRNPKSIPAD 846


>Z99942-3|CAB17071.2|  585|Caenorhabditis elegans Hypothetical
           protein H13N06.6 protein.
          Length = 585

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +3

Query: 267 DFYTRVNTTYNRVSSFWFVIINIGGNMTSCGLRQTGACYERSPTGCRVCWHN 422
           D Y+ V    N V   ++ ++N+G    +C L+  G  +E      R  W N
Sbjct: 505 DMYSNVKDWGNGVDEEFYNVLNVGNMNMNC-LKSNGEPFEFESKDSRQSWEN 555


>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
 Frame = -3

Query: 485 SMLEETNSRRTRGAHSARVYPVV--PTHPATRRRALVTRPR----LPKPTARHVPADIDD 324
           S L +T+S  +  +  A   P++  PTH  T++      PR    +P PT   VPA +  
Sbjct: 462 STLSKTDSHESSVSTEASQKPLLGPPTHHYTKKSQTQKEPRYSPSIPAPTFLMVPAMMAV 521

Query: 323 NEPKA 309
           N P A
Sbjct: 522 NTPPA 526


>AC006696-7|AAF39988.1|  140|Caenorhabditis elegans Hypothetical
           protein W08E12.3 protein.
          Length = 140

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 330 NIGGNMTSCGLRQTGACYERSPTGCRVCWHNGIDAGAVCSSCSPR 464
           N G N  +CG + T      +  GC     NG     +C+SC P+
Sbjct: 49  NCGCNGNNCGPQVTVVQVPNNNNGCSCSPCNGPVCAPMCNSCPPQ 93


>AC006696-6|AAF39986.1|  141|Caenorhabditis elegans Hypothetical
           protein W08E12.4 protein.
          Length = 141

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 330 NIGGNMTSCGLRQTGACYERSPTGCRVCWHNGIDAGAVCSSCSPR 464
           N G N  +CG + T      +  GC     NG     +C+SC P+
Sbjct: 49  NCGCNGNNCGPQVTVVQVPNNNNGCSCSPCNGPICAPMCNSCPPQ 93


>AC006696-5|AAF39987.1|  141|Caenorhabditis elegans Hypothetical
           protein W08E12.5 protein.
          Length = 141

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 330 NIGGNMTSCGLRQTGACYERSPTGCRVCWHNGIDAGAVCSSCSPR 464
           N G N  +CG + T      +  GC     NG     +C+SC P+
Sbjct: 49  NCGCNGNNCGPQVTVVQVPNNNNGCSCSPCNGPICAPMCNSCPPQ 93


>Z35595-5|CAA84636.1|  952|Caenorhabditis elegans Hypothetical
           protein C01G6.5 protein.
          Length = 952

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
 Frame = -3

Query: 449 GAHSARVYPVVPTHPATRRRALVTRPRLPKPT----ARHVPADIDDNEPKARNSVVRRVY 282
           G +++ V  V+   P T + A++T    PK T    A   P ++DD    A +      Y
Sbjct: 457 GNYASTVSRVMEMVPITSQVAVITTAGTPKHTSKGSAETAPMEVDDERHSASSGSTENNY 516

Query: 281 ARIKISSKNCHLDI 240
            R   S ++  LD+
Sbjct: 517 RRRTDSEESEILDV 530


>AF100306-8|ABB88213.1|  860|Caenorhabditis elegans Hypothetical
            protein T24C4.6a protein.
          Length = 860

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 28/98 (28%), Positives = 42/98 (42%)
 Frame = +2

Query: 263  RRFLYARKHDVQQSFELLVRYHQYRREHDELWASADGGVLRALADGLPGVLAQRDRRGRC 442
            RRF+  R    +    LL  YH Y  +H  +WA A+        DG       RD  G  
Sbjct: 752  RRFINYRSF--RPILRLLPLYHAYASQHWAVWALAN----LTTTDGEKYCAYVRDEGGVP 805

Query: 443  VLLVFASNWSPQACSLISVFRALLLTIERTLRDIQNQA 556
            +L    SN    A +   + R L  T+   +R+++N+A
Sbjct: 806  LLEELVSN----AITTTDI-RTLANTVLENIRNVENKA 838


>Z77652-7|CAB01119.1|  341|Caenorhabditis elegans Hypothetical
           protein C06B3.10 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 148 FSSHFTKPFILHLMQFPIVFGVLVHYWFS 62
           +  ++ +  I+ LM FP++FG LV +W +
Sbjct: 119 YIKNYDRQIIITLMTFPVIFG-LVWFWMT 146


>U23521-4|AAC46816.4|  389|Caenorhabditis elegans Hypothetical
           protein F41C3.11 protein.
          Length = 389

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 672 RTGIQSCKQSIIIFNTLACKLHDCLKVNSVQSTIITYPLAWF 547
           +TG +  KQ  I   TL   L D L  N++   +I     WF
Sbjct: 194 KTGYEWGKQEYINILTLRANLMDLLATNNIPFVLIEADATWF 235


>U21310-1|AAA62519.1|  997|Caenorhabditis elegans Hypothetical
           protein F40H6.2 protein.
          Length = 997

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 293 VQQSFELLVRYHQYRREHDELWASADG 373
           V +  E L+RY +Y  E D+L+A  +G
Sbjct: 55  VNEDIEGLIRYDEYYSEEDDLFAYTNG 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,605,072
Number of Sequences: 27780
Number of extensions: 342155
Number of successful extensions: 1168
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)