Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5898
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077531-1|AAC64610.1|  374|Caenorhabditis elegans Hypothetical ...    32   0.34 
M25479-1|AAA27993.1|  282|Caenorhabditis elegans collagen protein.     28   5.6  
Z81530-8|CAB04305.2|  329|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z32683-9|CAA83628.1|  253|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AF077531-1|AAC64610.1|  374|Caenorhabditis elegans Hypothetical
           protein F13C5.2 protein.
          Length = 374

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 485 EGEPVSKKYGPTRGERAEDRHSDRDSPGAAACPLRVNKKRKTQSTSEEE 631
           EG   ++  G  RG R   R S     GA   P +  +K+K +S SE+E
Sbjct: 61  EGGESTRGGGTGRGGRGRPRGSKNSDGGAGGPPAKRGRKKKAKSESEDE 109


>M25479-1|AAA27993.1|  282|Caenorhabditis elegans collagen protein.
          Length = 282

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 512 GPTRGERAEDRHSDRDSPGAAACP 583
           GPT G+       D   PGAA CP
Sbjct: 168 GPTGGQGGPGEQGDAGRPGAAGCP 191


>Z81530-8|CAB04305.2|  329|Caenorhabditis elegans Hypothetical
           protein F36D1.3 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -3

Query: 638 ILVLLPMCFAFFVFYLLSKDRLLLLGYPCQSADLLLFPLSLGHTFSKRAHLL 483
           I V+LP CF FF+   +     L   YP  +   ++F L L    ++  HLL
Sbjct: 155 ITVILPCCFTFFMVPAVGHCTQLTAPYPMGA---VMFTLDLKVRINEYTHLL 203


>Z32683-9|CAA83628.1|  253|Caenorhabditis elegans Hypothetical
           protein R07E5.15 protein.
          Length = 253

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 521 RGERAEDRHSDRDSPGAAACPLRVNKKRKT 610
           R  R   R S+R +  + AC ++ NKK K+
Sbjct: 206 RSSRRSSRSSNRSAKSSKACRVQANKKNKS 235


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,777,209
Number of Sequences: 27780
Number of extensions: 339717
Number of successful extensions: 891
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)