Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5896
(800 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 113 2e-25
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 98 1e-20
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 95 1e-19
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 93 4e-19
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 93 4e-19
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 91 1e-18
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 90 4e-18
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 89 7e-18
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 88 2e-17
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 87 3e-17
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 87 3e-17
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 87 3e-17
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 87 3e-17
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 87 3e-17
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 87 3e-17
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 81 2e-15
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 78 1e-14
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 78 1e-14
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 78 1e-14
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 71 2e-12
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 66 5e-11
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 59 8e-09
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 56 6e-08
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 46 5e-05
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 41 0.002
AE014296-3356|AAF51592.1| 2284|Drosophila melanogaster CG5847-PA... 31 2.4
U15220-1|AAA61796.1| 1051|Drosophila melanogaster gp150 protein ... 30 4.2
BT015195-1|AAT94424.1| 1076|Drosophila melanogaster RE72245p pro... 30 4.2
BT011025-1|AAR30185.1| 1051|Drosophila melanogaster RE46351p pro... 30 4.2
AY029705-1|AAK39644.1| 1051|Drosophila melanogaster leucine rich... 30 4.2
AE013599-3379|AAG22195.1| 1051|Drosophila melanogaster CG5820-PC... 30 4.2
AE013599-3378|AAM68222.1| 1051|Drosophila melanogaster CG5820-PB... 30 4.2
AE013599-3377|AAF46831.1| 1051|Drosophila melanogaster CG5820-PA... 30 4.2
AE013599-3376|AAM68221.1| 1076|Drosophila melanogaster CG5820-PD... 30 4.2
AL133504-1|CAB65843.1| 632|Drosophila melanogaster EG:BACH7M4.1... 29 7.4
AE014298-395|AAF45778.1| 1529|Drosophila melanogaster CG14045-PA... 29 7.4
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 113 bits (273), Expect = 2e-25
Identities = 70/196 (35%), Positives = 105/196 (53%), Gaps = 1/196 (0%)
Frame = +3
Query: 126 SYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVE 305
S ++ ++LK +P + P G LA +++E+A A+ L+T+ T + + E
Sbjct: 362 SLWKCTKSLKRQPFRQVP-IRCPGGELAK-NEEEQANCFANHLETRFTHFQFATTEQYQE 419
Query: 306 LVDS-EVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVM 482
+DS E + SLP + P+ E+ + IK L +K+PG D + N +K LPV+ I+
Sbjct: 420 TLDSLETPLQMSLP----IKPIRVEEIVEAIKSLPLKKSPGIDNVCNATLKALPVRAILY 475
Query: 483 LASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXX 662
LA I+NA + FP WK A ++ IHKPGKP+ P SYRPISLL S
Sbjct: 476 LALIYNAILRVQFFPKQWKMAAILMIHKPGKPEESPESYRPISLLSSLSKLWERLIANRL 535
Query: 663 XDFVSSKGILIDEQFG 710
D ++ + IL D QFG
Sbjct: 536 NDIMTERRILPDHQFG 551
Score = 37.9 bits (84), Expect = 0.016
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +1
Query: 682 RAFLSMNNSGFRTNHSCVQQVHRLTEHIL 768
R L + GFR HS V+QVHRLT+HIL
Sbjct: 542 RRILPDHQFGFRQGHSTVEQVHRLTKHIL 570
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 98.3 bits (234), Expect = 1e-20
Identities = 70/190 (36%), Positives = 95/190 (50%), Gaps = 3/190 (1%)
Frame = +3
Query: 63 IAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPP--LVGPSGRLAAFDDDEKAE 236
+A + A+ FL+ L + Y L R K P + PSG EK E
Sbjct: 141 LARRKQAQIDTFLDNLGADASTNYSLWRITKRFKAQPTPKSAIKNPSGGWCR-TSLEKTE 199
Query: 237 LLADTLQTQCTPSTQSVDPVHVELVDS-EVERRASLPPSDALPPVTPMEVKDLIKDLRPR 413
+ A+ L+ + TP + + + ++ + E + SLPPS VT EVK+LI L +
Sbjct: 200 VFANNLEQRFTPYNYAPESLCRQVEEYLESPFQMSLPPS----AVTLEEVKNLIAKLPLK 255
Query: 414 KAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPT 593
KAPG D + NR I+LLP Q + L IFN+ + FP WK A +I IHK GK
Sbjct: 256 KAPGEDLLDNRTIRLLPDQALQFLVLIFNSVLDVGYFPKAWKSASIIMIHKTGKTPTDVD 315
Query: 594 SYRPISLLMS 623
SYRPISLL S
Sbjct: 316 SYRPISLLPS 325
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 94.7 bits (225), Expect = 1e-19
Identities = 69/190 (36%), Positives = 94/190 (49%), Gaps = 3/190 (1%)
Frame = +3
Query: 63 IAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPP--LVGPSGRLAAFDDDEKAE 236
+A + A+ FL+ L + Y L R K P + PSG EK E
Sbjct: 339 LARRKQAQIDTFLDNLGADASTNYSLWRITKRFKAQPTPKSAIKNPSGGWCR-TSLEKTE 397
Query: 237 LLADTLQTQCTPSTQSVDPVHVELVDS-EVERRASLPPSDALPPVTPMEVKDLIKDLRPR 413
+ A+ L+ + TP + + + ++ + E + SLP L VT EVK+LI L +
Sbjct: 398 VFANNLEQRFTPYNYAPESLCRQVEEYLESPFQMSLP----LSAVTLEEVKNLIAKLPLK 453
Query: 414 KAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPT 593
KAPG D + NR I+LLP Q + LA IFN+ + FP WK A +I IHK GK
Sbjct: 454 KAPGEDLLDNRTIRLLPDQALQFLALIFNSVLDVGYFPKAWKSASIIMIHKTGKTPTDVD 513
Query: 594 SYRPISLLMS 623
SYRP SLL S
Sbjct: 514 SYRPTSLLPS 523
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 93.1 bits (221), Expect = 4e-19
Identities = 58/190 (30%), Positives = 97/190 (51%), Gaps = 1/190 (0%)
Frame = +3
Query: 51 VKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEK 230
++ + +A+W++ L+ L + ++ + + +K + P + + + A EK
Sbjct: 358 IRKELFIYNNAKWNNKLQKLDKCSKPFWNITKAIKKRKQIV--PCLSKADEIYA-SGKEK 414
Query: 231 AELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDA-LPPVTPMEVKDLIKDLR 407
A +LAD Q + + + ++ V ++ A P + A + VT EV ++K L
Sbjct: 415 ANILADVFQLKHNLTHSYSNQNTIDQVKISLQSIAETPNNIAEICRVTYPEVFSIVKALH 474
Query: 408 PRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNH 587
RK+PG DGI N +K LP I + +I N + FP WK A ++ I KPGKP ++
Sbjct: 475 TRKSPGIDGIPNISLKNLPTSAINHIVNIANHCLQAGYFPRDWKIAKIVPILKPGKPPDN 534
Query: 588 PTSYRPISLL 617
P SYRPISLL
Sbjct: 535 PESYRPISLL 544
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 93.1 bits (221), Expect = 4e-19
Identities = 58/190 (30%), Positives = 97/190 (51%), Gaps = 1/190 (0%)
Frame = +3
Query: 51 VKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEK 230
++ + +A+W++ L+ L + ++ + + +K + P + + + A EK
Sbjct: 306 IRKELFIYNNAKWNNKLQKLDKCSKPFWNITKAIKKRKQIV--PCLSKADEIYA-SGKEK 362
Query: 231 AELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDA-LPPVTPMEVKDLIKDLR 407
A +LAD Q + + + ++ V ++ A P + A + VT EV ++K L
Sbjct: 363 ANILADVFQLKHNLTHSYSNQNTIDQVKISLQSIAETPNNIAEICRVTYPEVFSIVKALH 422
Query: 408 PRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNH 587
RK+PG DGI N +K LP I + +I N + FP WK A ++ I KPGKP ++
Sbjct: 423 TRKSPGIDGIPNISLKNLPTSAINHIVNIANHCLQAGYFPRDWKIAKIVPILKPGKPPDN 482
Query: 588 PTSYRPISLL 617
P SYRPISLL
Sbjct: 483 PESYRPISLL 492
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 91.5 bits (217), Expect = 1e-18
Identities = 64/177 (36%), Positives = 93/177 (52%), Gaps = 3/177 (1%)
Frame = +3
Query: 96 FLEGLAPSQRSY--YRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEKAELLADTLQTQCT 269
++E L+P+ Y +R R LK+ MP L PSG D+E+A AD LQ
Sbjct: 348 YIEQLSPTSTKYPLWRAHRNLKTPIAPIMP-LRSPSGTWFR-SDEERASAFADHLQNVFR 405
Query: 270 PSTQSVDPVHVELVDSEVERRASLPPSDALPPVTPMEVKDLIKD-LRPRKAPGSDGISNR 446
P+ + + L+ A+L P + P E+ +IK+ L PRK+PG D I+ R
Sbjct: 406 PNPSTNTFILPPLI------AANLDPQEPFE-FRPCELAKVIKEQLNPRKSPGYDLITPR 458
Query: 447 VIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLL 617
++ LP I+ + +FNA FP WK++ ++ I KPGK K P+SYRPISLL
Sbjct: 459 MLIELPKCAILHICLLFNAIAKLGYFPQKWKKSTIVMIPKPGKDKTQPSSYRPISLL 515
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 89.8 bits (213), Expect = 4e-18
Identities = 64/177 (36%), Positives = 93/177 (52%), Gaps = 3/177 (1%)
Frame = +3
Query: 96 FLEGLAPSQRSY--YRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEKAELLADTLQTQCT 269
++E L+P+ Y +R R LK+ MP L PSG D+E+A AD LQ
Sbjct: 348 YIEQLSPTSTKYPLWRAHRNLKTPIAPIMP-LRSPSGTWFR-SDEERACAFADHLQNVFR 405
Query: 270 PSTQSVDPVHVELVDSEVERRASLPPSDALPPVTPMEVKDLIKD-LRPRKAPGSDGISNR 446
P+ + + L+ A+L P + P E+ +IK+ L PRK+PG D I+ R
Sbjct: 406 PNPSTNTFILPPLI------AANLDPQEPFE-FRPCELAKVIKEQLNPRKSPGYDLITPR 458
Query: 447 VIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLL 617
++ LP I+ + +FNA FP WK++ ++ I KPGK K P+SYRPISLL
Sbjct: 459 MLIELPKCAILHICLLFNAIAKLGYFPQKWKKSTIVMIPKPGKDKTQPSSYRPISLL 515
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 89.0 bits (211), Expect = 7e-18
Identities = 66/214 (30%), Positives = 104/214 (48%), Gaps = 13/214 (6%)
Frame = +3
Query: 15 ENRIRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQ----RSYYRLARTLKSDTVVTMP- 179
E++ +++A + +K I +R+ R ++ +EG+ S R ++L K P
Sbjct: 352 EDKAKLKAAENRLKKAIKILRENRINEQVEGIDTSNPDRMRKMWKLLDEGKRTNQPNFPL 411
Query: 180 PLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELV--------DSEVERRA 335
L G E E L+ + P+ +V H++ V +S + R
Sbjct: 412 KLETQKGPKWTKTIKETTETFVSHLEGRFKPNN-NVPDYHIDRVNTGLRIIKESMLTERH 470
Query: 336 SLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMAN 515
+L + P+T E+ D IK+L+ KAPG D I+N++IK LP + + L I+N+ +
Sbjct: 471 NLNKNPHNQPITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRL 530
Query: 516 CIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLL 617
+P WK A V I KPGK N P SYRPISLL
Sbjct: 531 GYYPEAWKHAQVKMILKPGKSANEPRSYRPISLL 564
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 87.8 bits (208), Expect = 2e-17
Identities = 66/216 (30%), Positives = 105/216 (48%), Gaps = 13/216 (6%)
Frame = +3
Query: 9 TAENRIRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQ----RSYYRLARTLKSDTVVTM 176
T E++ +++A + +K I +R+ R ++ +EG+ + R +RL K
Sbjct: 362 TNEDKTKLKAAENRLKKVIKILREKRINEQIEGIDTNNPDRMRKIWRLLSEGKKMNQPNF 421
Query: 177 P-PLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELV--------DSEVER 329
P L G E E L+ + P+ + V H++ V +S +
Sbjct: 422 PLKLETKKGPKWTKTIKETTEAFVSHLEGRFKPN-KIVPDYHIDKVNTGLRIIKESMLTE 480
Query: 330 RASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAM 509
R +L + P+T E+ + IK+L+ KAPG D I+N++IK LP + + L I+N+ +
Sbjct: 481 RHNLNKNPHNQPITLNELNEEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSIL 540
Query: 510 ANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLL 617
+P WK A V I KPGK N P SYRPISLL
Sbjct: 541 RLGYYPEAWKHAQVKMILKPGKSSNEPKSYRPISLL 576
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 87.0 bits (206), Expect = 3e-17
Identities = 65/215 (30%), Positives = 102/215 (47%), Gaps = 12/215 (5%)
Frame = +3
Query: 9 TAENRIRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQ----RSYYRLARTLKSDTVVTM 176
T E++ +++A + +K + +R+ R + +EG+ R +RL K
Sbjct: 350 TDEDKAKLKAAENRLKKAVKILREKRINKQIEGIDTKNPDRMRKMWRLLDEGKKTNQPNF 409
Query: 177 P-PLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQ----SVDPVHVEL---VDSEVERR 332
P L G E E L+ + P+ ++PV+ L +S + R
Sbjct: 410 PLKLETKRGPKWTKTIKETTEAFVSHLEGRFKPNNNVPDYHINPVNSGLRTIKESMLTER 469
Query: 333 ASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMA 512
+ + P+T E+ D IK+L+ KAPG D I+N++IK LP + + L I+N+ +
Sbjct: 470 YDVNKNPCNQPITLKELNDEIKNLKNSKAPGKDLITNQLIKALPTKATLYLILIYNSILR 529
Query: 513 NCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLL 617
+P WK A V I KPGK N P SYRPISLL
Sbjct: 530 IGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISLL 564
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 87.0 bits (206), Expect = 3e-17
Identities = 62/196 (31%), Positives = 89/196 (45%), Gaps = 1/196 (0%)
Frame = +3
Query: 126 SYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTP-STQSVDPVHV 302
S ++ R +K PLV +G D + AE+ A L + P S+ V
Sbjct: 361 SLWKATRAIKR-RCTRKAPLVDSNGTWCRTDLGQ-AEVFAAHLAERFQPFKLASLQQVE- 417
Query: 303 ELVDSEVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVM 482
+++ + +L + P P EV ++I KAPG D I N +K LP Q I+
Sbjct: 418 ---ETQDQLNQALQMDMPITPFEPCEVAEVIVRQSNNKAPGHDVICNATLKALPRQAILY 474
Query: 483 LASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXX 662
+ +FNA + FP WK + IHKPGKP+ P SYRPISLL S
Sbjct: 475 ITLVFNAIVRLQYFPYQWKLGIISMIHKPGKPEREPASYRPISLLPSISKVFERLIAVRI 534
Query: 663 XDFVSSKGILIDEQFG 710
+ ++GI + QFG
Sbjct: 535 VSIMEAQGITPEHQFG 550
Score = 29.1 bits (62), Expect = 7.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 709 GFRTNHSCVQQVHRLTEHIL 768
GFR H V+Q+HR+ E IL
Sbjct: 550 GFRAGHCTVEQLHRVVEQIL 569
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 86.6 bits (205), Expect = 3e-17
Identities = 65/216 (30%), Positives = 101/216 (46%), Gaps = 13/216 (6%)
Frame = +3
Query: 9 TAENRIRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQ----RSYYRLARTLKSDTVVTM 176
T E++ +++A + +K + +R+ R + +EG+ R +RL K
Sbjct: 234 TDEDKAKLKAAENRLKKAVKILREKRINKQIEGIDTKNPDRMRKMWRLLDEGKKTNQPNF 293
Query: 177 P-PLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVE--------R 329
P L G E E L+ + P+ +V H+ V+S +
Sbjct: 294 PLKLETKRGPKWTKTIKETTEAFVSHLEGRFKPNN-NVPDYHINTVNSGLRTIKESMLTE 352
Query: 330 RASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAM 509
R + + P+T E+ D IK+L+ KAPG D I+N++IK LP + + L I+N+ +
Sbjct: 353 RYDVNKNPCNQPITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSIL 412
Query: 510 ANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLL 617
+P WK A V I KPGK N P SYRPISLL
Sbjct: 413 RIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISLL 448
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 86.6 bits (205), Expect = 3e-17
Identities = 65/216 (30%), Positives = 101/216 (46%), Gaps = 13/216 (6%)
Frame = +3
Query: 9 TAENRIRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQ----RSYYRLARTLKSDTVVTM 176
T E++ +++A + +K + +R+ R + +EG+ R +RL K
Sbjct: 350 TDEDKAKLKAAENRLKKAVKILREKRINKQIEGIDTKNPDRMRKMWRLLDEGKKTNQPNF 409
Query: 177 P-PLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVE--------R 329
P L G E E L+ + P+ +V H+ V+S +
Sbjct: 410 PLKLETKRGPKWTKTIKETTEAFVSHLEGRFKPNN-NVPDYHINTVNSGLRTIKESMLTE 468
Query: 330 RASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAM 509
R + + P+T E+ D IK+L+ KAPG D I+N++IK LP + + L I+N+ +
Sbjct: 469 RYDVNKNPCNQPITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSIL 528
Query: 510 ANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLL 617
+P WK A V I KPGK N P SYRPISLL
Sbjct: 529 RIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISLL 564
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 86.6 bits (205), Expect = 3e-17
Identities = 65/216 (30%), Positives = 101/216 (46%), Gaps = 13/216 (6%)
Frame = +3
Query: 9 TAENRIRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQ----RSYYRLARTLKSDTVVTM 176
T E++ +++A + +K + +R+ R + +EG+ R +RL K
Sbjct: 312 TDEDKAKLKAAENRLKKAVKILREKRINKQIEGIDTKNPDRMRKMWRLLDEGKKTNQPNF 371
Query: 177 P-PLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVE--------R 329
P L G E E L+ + P+ +V H+ V+S +
Sbjct: 372 PLKLETKRGPKWTKTIKETTEAFVSHLEGRFKPNN-NVPDYHINTVNSGLRTIKESMLTE 430
Query: 330 RASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAM 509
R + + P+T E+ D IK+L+ KAPG D I+N++IK LP + + L I+N+ +
Sbjct: 431 RYDVNKNPCNQPITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSIL 490
Query: 510 ANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLL 617
+P WK A V I KPGK N P SYRPISLL
Sbjct: 491 RIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISLL 526
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 86.6 bits (205), Expect = 3e-17
Identities = 65/216 (30%), Positives = 101/216 (46%), Gaps = 13/216 (6%)
Frame = +3
Query: 9 TAENRIRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQ----RSYYRLARTLKSDTVVTM 176
T E++ +++A + +K + +R+ R + +EG+ R +RL K
Sbjct: 350 TDEDKAKLKAAENRLKKAVKILREKRINKQIEGIDTKNPDRMRKMWRLLDEGKKTNQPNF 409
Query: 177 P-PLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVE--------R 329
P L G E E L+ + P+ +V H+ V+S +
Sbjct: 410 PLKLETKRGPKWTKTIKETTEAFVSHLEGRFKPNN-NVPDYHINTVNSGLRTIKESMLTE 468
Query: 330 RASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAM 509
R + + P+T E+ D IK+L+ KAPG D I+N++IK LP + + L I+N+ +
Sbjct: 469 RYDVNKNPCNQPITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSIL 528
Query: 510 ANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLL 617
+P WK A V I KPGK N P SYRPISLL
Sbjct: 529 RIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISLL 564
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 80.6 bits (190), Expect = 2e-15
Identities = 67/208 (32%), Positives = 99/208 (47%), Gaps = 4/208 (1%)
Frame = +3
Query: 6 PTAENRIRMRALQRDVKSRIAEVRDARWSDFLEGLAPS---QRSYYRLARTLKSDTVVTM 176
PTA+ ++++ R + + + + D ++E L P+ Q+S +R TL+ T T+
Sbjct: 321 PTAKQKLKVAT--RKLANALKQEEDDDQRRYIEQLTPTGTKQKSLWRAHSTLRPPTE-TV 377
Query: 177 PPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDA 356
P+ SG A D+D +A A LQ TP+ + L V R P
Sbjct: 378 LPIKNSSGGWARSDED-RANTFAAHLQNVFTPNQATST---FALPSYPVNRHQQHTPI-- 431
Query: 357 LPPVTPMEVKDLIKD-LRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAV 533
P E+ +IKD L P+K+PG D I+ +I LP + + +FNA FP
Sbjct: 432 --VFRPKEITKIIKDNLSPKKSPGYDLITPEMIIQLPHSAVRYITKLFNAITKLGYFPQR 489
Query: 534 WKEADVIGIHKPGKPKNHPTSYRPISLL 617
WK +I I KPGK +SYRPISLL
Sbjct: 490 WKMMKIIMIPKPGKNHTVASSYRPISLL 517
Score = 29.1 bits (62), Expect = 7.4
Identities = 19/87 (21%), Positives = 41/87 (47%)
Frame = +1
Query: 505 LWRTVSFPRCGKKRTLSAYINPVNQKIIRRATARLASSCL*ANCMSVCSTNASETSSHPR 684
+ + + P+ GK T+++ P++ + ++L CL + N +T +
Sbjct: 492 MMKIIMIPKPGKNHTVASSYRPIS---LLSCISKLFEKCL------LIRLNQHQTYHN-- 540
Query: 685 AFLSMNNSGFRTNHSCVQQVHRLTEHI 765
+ + GFR +H ++QV+R+T I
Sbjct: 541 -IIPAHQFGFRESHGTIEQVNRITTEI 566
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 78.2 bits (184), Expect = 1e-14
Identities = 57/168 (33%), Positives = 76/168 (45%), Gaps = 5/168 (2%)
Frame = +3
Query: 222 DEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDA-----LPPVTPMEVK 386
DEKAE A L+++ + Q D E V +E+ + SL S PVT E+
Sbjct: 432 DEKAEAFASHLESRFR-TNQINDAKDREFVRNELNKFKSLNASGESGNSNFKPVTLAELN 490
Query: 387 DLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHK 566
LI L +KAPG+D ++N+ I LP + + L I+N + FP WK A + I K
Sbjct: 491 GLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKHASISMIPK 550
Query: 567 PGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFG 710
PGK SYRPISLL D S + QFG
Sbjct: 551 PGKSPFALNSYRPISLLSGLSKLLERILPKRLYDIDSFAKAIPSHQFG 598
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 78.2 bits (184), Expect = 1e-14
Identities = 57/168 (33%), Positives = 76/168 (45%), Gaps = 5/168 (2%)
Frame = +3
Query: 222 DEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDA-----LPPVTPMEVK 386
DEKAE A L+++ + Q D E V +E+ + SL S PVT E+
Sbjct: 432 DEKAEAFASHLESRFR-TNQINDAKDREFVRNELNKFKSLNASGESGNSNFKPVTLAELN 490
Query: 387 DLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHK 566
LI L +KAPG+D ++N+ I LP + + L I+N + FP WK A + I K
Sbjct: 491 GLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKHASISMIPK 550
Query: 567 PGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFG 710
PGK SYRPISLL D S + QFG
Sbjct: 551 PGKSPFALNSYRPISLLSGLSKLLERILLKRLYDIDSFAKAIPSHQFG 598
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 78.2 bits (184), Expect = 1e-14
Identities = 57/168 (33%), Positives = 76/168 (45%), Gaps = 5/168 (2%)
Frame = +3
Query: 222 DEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDA-----LPPVTPMEVK 386
DEKAE A L+++ + Q D E V +E+ + SL S PVT E+
Sbjct: 432 DEKAEAFASHLESRFR-TNQINDAKDREFVRNELNKFKSLNASGESGNSNFKPVTLAELN 490
Query: 387 DLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHK 566
LI L +KAPG+D ++N+ I LP + + L I+N + FP WK A + I K
Sbjct: 491 GLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKHASISMIPK 550
Query: 567 PGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFG 710
PGK SYRPISLL D S + QFG
Sbjct: 551 PGKSPFALNSYRPISLLSGLSKLLERILLKRLYDIDSFAKAIPSHQFG 598
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 70.9 bits (166), Expect = 2e-12
Identities = 48/141 (34%), Positives = 64/141 (45%), Gaps = 5/141 (3%)
Frame = +3
Query: 303 ELVDSEVERRASLPPSDA-----LPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPV 467
E V +E+++ SL S PVT E+ LI L +KAPG+D ++N+ I LP
Sbjct: 11 EFVRNELDKFKSLNASGESGNSNFKPVTLAELNGLINSLELKKAPGTDNLNNKTIINLPT 70
Query: 468 QLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXX 647
+ + L I+N + FP WK A + I KPGK SYRPISLL
Sbjct: 71 KARIYLILIYNNILRTGHFPNKWKHASISMIPKPGKSPFALNSYRPISLLSGLSKLLERI 130
Query: 648 XXXXXXDFVSSKGILIDEQFG 710
D S + QFG
Sbjct: 131 LLKRLYDIDSFAKAIPSHQFG 151
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 66.1 bits (154), Expect = 5e-11
Identities = 32/92 (34%), Positives = 47/92 (51%)
Frame = +3
Query: 342 PPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCI 521
PP+ P +T EV + K +RP KAPG DGI ++K + F + + +
Sbjct: 394 PPASDFPCITSCEVVEAAKRIRPNKAPGIDGIPGVIVKAAATARPEVFRDTFQQCLLDGV 453
Query: 522 FPAVWKEADVIGIHKPGKPKNHPTSYRPISLL 617
FP WK+ ++ + K P N P SYRP+ LL
Sbjct: 454 FPKRWKKMKLVLLLKGKGPANVPRSYRPLCLL 485
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 58.8 bits (136), Expect = 8e-09
Identities = 31/83 (37%), Positives = 47/83 (56%)
Frame = +3
Query: 369 TPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEAD 548
T +E+++ + + K+PG+D +S ++K L L L IFN + +P W+ A
Sbjct: 438 TLLEIENSVAKAKG-KSPGADRVSYPMLKNLSPHLKTKLLDIFNQILTTGKYPHTWRSAI 496
Query: 549 VIGIHKPGKPKNHPTSYRPISLL 617
+I I KP KP + SYRPISLL
Sbjct: 497 IIPISKPNKPPSDINSYRPISLL 519
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 56.0 bits (129), Expect = 6e-08
Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Frame = +3
Query: 324 ERRASLPPSDALPPVTPM-EVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFN 500
E A ++ +PP + EV + L+ R++PG DGI+ + K + + LAS+F+
Sbjct: 419 ESEAPTAIAEEVPPALEVFEVDTCVARLKSRRSPGLDGINGTICKAVWRAIPEHLASLFS 478
Query: 501 AAMANCIFPAVWKEADVIGIHK-PGKPKNHPTSYRPISLL 617
+ FPA WK V+ + K P K K P+SYR I LL
Sbjct: 479 RCIRLGYFPAEWKCPRVVSLLKGPDKDKCEPSSYRGICLL 518
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 46.4 bits (105), Expect = 5e-05
Identities = 29/88 (32%), Positives = 39/88 (44%)
Frame = +3
Query: 459 LPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSXXXXX 638
LP+ ++ + +FNA FP WK++ +I I KP K K P SYRPISLL
Sbjct: 5 LPMCAVMRICLLFNAITKIGYFPQKWKKSIIIMIPKPEKDKTQP-SYRPISLLTCLSKLF 63
Query: 639 XXXXXXXXXDFVSSKGILIDEQFGIPYK 722
+ + L QF P K
Sbjct: 64 EKGLLLRISPHLKTHNTLPSYQFDFPAK 91
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 40.7 bits (91), Expect = 0.002
Identities = 32/115 (27%), Positives = 51/115 (44%)
Frame = +3
Query: 366 VTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEA 545
+T +E+ ++ L+ APG + IS ++IK + +FN N P +K +
Sbjct: 433 ITYLELSSALQTLKGC-APGLNRISYQMIKNSSHTTKNRITKLFNEIF-NSHIPQAYKTS 490
Query: 546 DVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFG 710
+I I KP K +SYRPISL V+ ++ D+QFG
Sbjct: 491 LIIPILKPNTDKTKTSSYRPISLNCCIAKILDKIIAKRLWWLVTYNNLINDKQFG 545
>AE014296-3356|AAF51592.1| 2284|Drosophila melanogaster CG5847-PA
protein.
Length = 2284
Score = 30.7 bits (66), Expect = 2.4
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = +1
Query: 178 PPS*APQADSRRSMMTKKQSCWPIHCKPSARPALNPWTLFM*N**TVR*NAEPPCHPRMR 357
P + PQ R S+ TK+ C+P P +P P T+ + + +P C P
Sbjct: 478 PATYVPQTTRRPSITTKRPRCYPGSTDPECQPRTRP-TITTSQPRCSQGSTDPECQPATY 536
Query: 358 YHPSPR 375
P+ R
Sbjct: 537 LPPTTR 542
>U15220-1|AAA61796.1| 1051|Drosophila melanogaster gp150 protein
protein.
Length = 1051
Score = 29.9 bits (64), Expect = 4.2
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 237 LLADTLQTQCTPSTQSVDP----VHVELVDSEVERRASLPPSDALPPVTPMEVKDL 392
LLA TL + +V P +H +L ++E+ + P+++LP ++ +VKDL
Sbjct: 12 LLAFTLALIHASHSNTVGPKIHFIHDDLTENELNSGEEVSPTESLPKISTPKVKDL 67
>BT015195-1|AAT94424.1| 1076|Drosophila melanogaster RE72245p
protein.
Length = 1076
Score = 29.9 bits (64), Expect = 4.2
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 237 LLADTLQTQCTPSTQSVDP----VHVELVDSEVERRASLPPSDALPPVTPMEVKDL 392
LLA TL + +V P +H +L ++E+ + P+++LP ++ +VKDL
Sbjct: 37 LLAFTLALIHASHSNTVGPKIHFIHDDLTENELNSGEEVSPTESLPKISTPKVKDL 92
>BT011025-1|AAR30185.1| 1051|Drosophila melanogaster RE46351p
protein.
Length = 1051
Score = 29.9 bits (64), Expect = 4.2
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 237 LLADTLQTQCTPSTQSVDP----VHVELVDSEVERRASLPPSDALPPVTPMEVKDL 392
LLA TL + +V P +H +L ++E+ + P+++LP ++ +VKDL
Sbjct: 12 LLAFTLALIHASHSNTVGPKIHFIHDDLTENELNSGEEVSPTESLPKISTPKVKDL 67
>AY029705-1|AAK39644.1| 1051|Drosophila melanogaster leucine rich
repeat protein GP150 protein.
Length = 1051
Score = 29.9 bits (64), Expect = 4.2
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 237 LLADTLQTQCTPSTQSVDP----VHVELVDSEVERRASLPPSDALPPVTPMEVKDL 392
LLA TL + +V P +H +L ++E+ + P+++LP ++ +VKDL
Sbjct: 12 LLAFTLALIHASHSNTVGPKIHFIHDDLTENELNSGEEVSPTESLPKISTPKVKDL 67
>AE013599-3379|AAG22195.1| 1051|Drosophila melanogaster CG5820-PC,
isoform C protein.
Length = 1051
Score = 29.9 bits (64), Expect = 4.2
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 237 LLADTLQTQCTPSTQSVDP----VHVELVDSEVERRASLPPSDALPPVTPMEVKDL 392
LLA TL + +V P +H +L ++E+ + P+++LP ++ +VKDL
Sbjct: 12 LLAFTLALIHASHSNTVGPKIHFIHDDLTENELNSGEEVSPTESLPKISTPKVKDL 67
>AE013599-3378|AAM68222.1| 1051|Drosophila melanogaster CG5820-PB,
isoform B protein.
Length = 1051
Score = 29.9 bits (64), Expect = 4.2
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 237 LLADTLQTQCTPSTQSVDP----VHVELVDSEVERRASLPPSDALPPVTPMEVKDL 392
LLA TL + +V P +H +L ++E+ + P+++LP ++ +VKDL
Sbjct: 12 LLAFTLALIHASHSNTVGPKIHFIHDDLTENELNSGEEVSPTESLPKISTPKVKDL 67
>AE013599-3377|AAF46831.1| 1051|Drosophila melanogaster CG5820-PA,
isoform A protein.
Length = 1051
Score = 29.9 bits (64), Expect = 4.2
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 237 LLADTLQTQCTPSTQSVDP----VHVELVDSEVERRASLPPSDALPPVTPMEVKDL 392
LLA TL + +V P +H +L ++E+ + P+++LP ++ +VKDL
Sbjct: 12 LLAFTLALIHASHSNTVGPKIHFIHDDLTENELNSGEEVSPTESLPKISTPKVKDL 67
>AE013599-3376|AAM68221.1| 1076|Drosophila melanogaster CG5820-PD,
isoform D protein.
Length = 1076
Score = 29.9 bits (64), Expect = 4.2
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 237 LLADTLQTQCTPSTQSVDP----VHVELVDSEVERRASLPPSDALPPVTPMEVKDL 392
LLA TL + +V P +H +L ++E+ + P+++LP ++ +VKDL
Sbjct: 37 LLAFTLALIHASHSNTVGPKIHFIHDDLTENELNSGEEVSPTESLPKISTPKVKDL 92
>AL133504-1|CAB65843.1| 632|Drosophila melanogaster EG:BACH7M4.1
protein.
Length = 632
Score = 29.1 bits (62), Expect = 7.4
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 604 RLASSCL*ANCMSVCSTNASETSSHPRAFLSMNNSGFRTNHSCVQQVH 747
RLAS+ +C S +++A++T SHP+ L + RTN Q H
Sbjct: 349 RLASAVR-HHCASTTTSSATQTQSHPQPPLCTTSLPSRTNSPARNQRH 395
>AE014298-395|AAF45778.1| 1529|Drosophila melanogaster CG14045-PA
protein.
Length = 1529
Score = 29.1 bits (62), Expect = 7.4
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 604 RLASSCL*ANCMSVCSTNASETSSHPRAFLSMNNSGFRTNHSCVQQVH 747
RLAS+ +C S +++A++T SHP+ L + RTN Q H
Sbjct: 1246 RLASAVR-HHCASTTTSSATQTQSHPQPPLCTTSLPSRTNSPARNQRH 1292
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,351,422
Number of Sequences: 53049
Number of extensions: 854477
Number of successful extensions: 2625
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 2442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2621
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3736869864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -