Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5896
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    61   1e-09
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    52   6e-07
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    52   6e-07
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    47   2e-05
AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical ...    33   0.31 
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    31   0.73 
Z81034-4|CAB02729.1|  541|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z70307-7|CAA94336.2|  531|Caenorhabditis elegans Hypothetical pr...    30   2.2  
AC024859-11|AAK29981.1|  933|Caenorhabditis elegans Hypothetical...    28   8.9  
AC024859-10|ABA00158.1|  832|Caenorhabditis elegans Hypothetical...    28   8.9  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 33/84 (39%), Positives = 50/84 (59%)
 Frame = +3

Query: 366 VTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEA 545
           +T +E+ ++   + P  A G DGI+   I+ LP+     LA ++N +++  I P  WK+A
Sbjct: 328 ITSIELHNMAIKMSPSAAIGPDGIAQIHIRKLPMCGYSFLAYLYNVSLSTNIIPDKWKKA 387

Query: 546 DVIGIHKPGKPKNHPTSYRPISLL 617
           +VI I KP K     +SYRPISLL
Sbjct: 388 NVIMIPKPKKDPAIASSYRPISLL 411


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
 Frame = +3

Query: 279 QSVDPVHVELVDSEVE--RRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVI 452
           Q ++  + EL  S V   + +S+P +   PP  P E++ +++     KA G D IS   +
Sbjct: 516 QEIEKFYTELFKSAVSNSQTSSIPATATPPPFLPEEIRHVLRSFPNGKAAGQDKISADFL 575

Query: 453 KLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLL 617
           K     +I ++   FN  + +   P  WK +    I K G  +N   +YRPI LL
Sbjct: 576 KSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN-LENYRPICLL 629


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
 Frame = +3

Query: 279 QSVDPVHVELVDSEVE--RRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVI 452
           Q ++  + EL  S V   + +S+P +   PP  P E++ +++     KA G D IS   +
Sbjct: 255 QEIEKFYTELFKSAVSNSQTSSIPATATPPPFLPEEIRHVLRSFPNGKAAGQDKISADFL 314

Query: 453 KLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLL 617
           K     +I ++   FN  + +   P  WK +    I K G  +N   +YRPI LL
Sbjct: 315 KSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN-LENYRPICLL 368


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
 Frame = +3

Query: 279 QSVDPVHVELVDSEVE--RRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVI 452
           Q ++  + E   S V   + +S+P +   PP  P +++  ++     KA G D IS   +
Sbjct: 345 QEIEKFYTEFFKSAVSNSQASSIPTTATPPPFLPEKIRYALRSFPNGKAAGQDKISADFL 404

Query: 453 KLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLL 617
           K     +I ++   FN  + +   P  WK +    I K G  +N   +YRPI LL
Sbjct: 405 KSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN-LENYRPICLL 458


>AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical
           protein F21E9.5 protein.
          Length = 864

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = +3

Query: 342 PP--SDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMAN 515
           PP  ++ LPP    E++  I      KA GSD I+   +K     +I ++   FN  + +
Sbjct: 386 PPIMAEPLPPFLFGEIRAAINSFPNGKAAGSDKITADFLKSCGDYVIRLITGRFNRYLES 445

Query: 516 CIFPAVWKEADVIGIHKPG 572
              P  WK +    I K G
Sbjct: 446 GNIPKDWKTSKTTLIFKKG 464


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical
           protein C41A3.1 protein.
          Length = 7829

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
 Frame = +3

Query: 183 LVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDP----VHVELVDSEVERRASLPPS 350
           +V P+GRLAAFD      + A++       S Q  +     +H E V S        P  
Sbjct: 202 MVSPNGRLAAFDRSANGFVRAESFAVAVLCSKQFAEENNLLIHCECVGSAFNSDGKTPSL 261

Query: 351 DALPPVTPMEVK 386
            A  P++  EV+
Sbjct: 262 TAPNPISQYEVQ 273


>Z81034-4|CAB02729.1|  541|Caenorhabditis elegans Hypothetical
           protein C15C6.3 protein.
          Length = 541

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +3

Query: 216 DDDEKAELLADTLQTQCTP---STQSVDPVHVELVDSEVERRASLPPSDALPP 365
           D+DE AE +A       +P   S++S  P   + VD  +E   + PP    PP
Sbjct: 431 DEDEPAEPIAQKAAAPVSPNPASSRSASPEPAQQVDELLESEEAAPPPPPPPP 483


>Z70307-7|CAA94336.2|  531|Caenorhabditis elegans Hypothetical
           protein C39E9.7 protein.
          Length = 531

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 22/68 (32%), Positives = 28/68 (41%)
 Frame = +1

Query: 499 MPLWRTVSFPRCGKKRTLSAYINPVNQKIIRRATARLASSCL*ANCMSVCSTNASETSSH 678
           M  + T++F  CG       + NPVN K I      LASS L  +       N    S H
Sbjct: 385 MRFFNTIAFGTCGIFLFTLGFFNPVNHKYIVTVMYILASSLLGCSYAGHLRMNQLR-SGH 443

Query: 679 PRAFLSMN 702
              FL +N
Sbjct: 444 LHLFLLVN 451


>AC024859-11|AAK29981.1|  933|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.15a protein.
          Length = 933

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = +3

Query: 360 PPVTPMEVKDLIKDLRPRKAPGSDGISNR 446
           PP  P ++++LI+D+  R +PG + +++R
Sbjct: 873 PPELPDQLRNLIEDVARRASPGPEQMNDR 901


>AC024859-10|ABA00158.1|  832|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.15b protein.
          Length = 832

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = +3

Query: 360 PPVTPMEVKDLIKDLRPRKAPGSDGISNR 446
           PP  P ++++LI+D+  R +PG + +++R
Sbjct: 772 PPELPDQLRNLIEDVARRASPGPEQMNDR 800


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,977,530
Number of Sequences: 27780
Number of extensions: 407426
Number of successful extensions: 1057
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)