Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5895
         (666 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC065563-1|AAH65563.1|  941|Homo sapiens vacuolar protein sortin...    30   8.5  
AK223158-1|BAD96878.1|  941|Homo sapiens vacuolar protein sortin...    30   8.5  
AF308800-1|AAG34677.1|  941|Homo sapiens vacuolar protein sortin...    30   8.5  
AB027508-1|BAA95163.2|  941|Homo sapiens hVPS11 protein.               30   8.5  

>BC065563-1|AAH65563.1|  941|Homo sapiens vacuolar protein sorting
           11 homolog (S. cerevisiae) protein.
          Length = 941

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = +3

Query: 441 HNRTSSQYLTRL*SLEASKTVCKFLFKYKILILTIRNISSLAVMSLGFRGHLTLDVLCAS 620
           H+    QY+  +  LE S  + KFL   +I  LT   + +L   SL    H TL + C +
Sbjct: 404 HDGAVQQYIRTIGKLEPSYVIRKFLDAQRIHNLT-AYLQTLHRQSLANADHTTLLLNCYT 462

Query: 621 RIK---KIQRFL 647
           ++K   K++ F+
Sbjct: 463 KLKDSSKLEEFI 474


>AK223158-1|BAD96878.1|  941|Homo sapiens vacuolar protein sorting
           11 (yeast homolog) variant protein.
          Length = 941

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = +3

Query: 441 HNRTSSQYLTRL*SLEASKTVCKFLFKYKILILTIRNISSLAVMSLGFRGHLTLDVLCAS 620
           H+    QY+  +  LE S  + KFL   +I  LT   + +L   SL    H TL + C +
Sbjct: 404 HDGAVQQYIRTIGKLEPSYVIRKFLDAQRIHNLT-AYLQTLHRQSLANADHTTLLLNCYT 462

Query: 621 RIK---KIQRFL 647
           ++K   K++ F+
Sbjct: 463 KLKDSSKLEEFI 474


>AF308800-1|AAG34677.1|  941|Homo sapiens vacuolar protein sorting
           protein 11 protein.
          Length = 941

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = +3

Query: 441 HNRTSSQYLTRL*SLEASKTVCKFLFKYKILILTIRNISSLAVMSLGFRGHLTLDVLCAS 620
           H+    QY+  +  LE S  + KFL   +I  LT   + +L   SL    H TL + C +
Sbjct: 404 HDGAVQQYIRTIGKLEPSYVIRKFLDAQRIHNLT-AYLQTLHRQSLANADHTTLLLNCYT 462

Query: 621 RIK---KIQRFL 647
           ++K   K++ F+
Sbjct: 463 KLKDSSKLEEFI 474


>AB027508-1|BAA95163.2|  941|Homo sapiens hVPS11 protein.
          Length = 941

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = +3

Query: 441 HNRTSSQYLTRL*SLEASKTVCKFLFKYKILILTIRNISSLAVMSLGFRGHLTLDVLCAS 620
           H+    QY+  +  LE S  + KFL   +I  LT   + +L   SL    H TL + C +
Sbjct: 404 HDGAVQQYIRTIGKLEPSYVIRKFLDAQRIHNLT-AYLQTLHRQSLANADHTTLLLNCYT 462

Query: 621 RIK---KIQRFL 647
           ++K   K++ F+
Sbjct: 463 KLKDSSKLEEFI 474


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,520,243
Number of Sequences: 237096
Number of extensions: 1400474
Number of successful extensions: 2110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2110
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7535049140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)