Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5892
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    29   0.74 
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|...    29   0.98 
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    27   3.9  
SPAC3G9.15c |fcf2||rRNA processing protein Fcf2 |Schizosaccharom...    26   5.2  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.2  
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    26   6.9  
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    26   6.9  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    26   6.9  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    26   6.9  

>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 431 DLAPSDFHLFRSLQNSLGSVRLTSREDCQNQLSRYFDQKPQNF 559
           D+ PS+  L +SL    GSV L S  D +N L  Y   K  +F
Sbjct: 417 DIKPSNIFLAKSLPEDRGSVPLISYND-KNDLKEYITPKIGDF 458


>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 271

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 68  ENWITYDKNVRKRSLSKAGQASQTVAKSELTRNKVMLCVWWDWKG 202
           +N  +Y + VR+  LS+  Q + +V+ +E+     +   WWDW G
Sbjct: 8   KNVKSYTRLVRQGFLSQ--QRNHSVSVNEVDHFNELAKTWWDWDG 50


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -1

Query: 269 SVVRSRVQNRWPCLVVTAHSE*CPSNPTTHTASPCCELTLISPQSVKPDRPL 114
           S+   R +NRW    + + SE  PS+  + + SP    T ++ +  +  +PL
Sbjct: 15  SINSERARNRWSTSHIPSLSEINPSSFQSPSPSPFASSTSLASKPARYSKPL 66


>SPAC3G9.15c |fcf2||rRNA processing protein Fcf2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
 Frame = +2

Query: 446 DFHLFRSLQNSLGSVRLTSREDCQNQLSRYFD-----QKPQNFYSMSLPTR 583
           D  L + ++N+L   R   RE+ ++ + +YF      + PQ+FYS  +PTR
Sbjct: 130 DIQLLK-MRNALDPKRHYRRENTKS-MPKYFQVGSIVEGPQDFYSSRIPTR 178


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 485 CLKNFEETETGGNLKVQGQHYTADALTPPSQA 390
           CLK+ E +E G NL +  + +T+  L  P Q+
Sbjct: 259 CLKHLESSEQGNNLLI-NKAFTSPRLPSPPQS 289


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 106 PFSHVLVVRDPIFITSYLLLQKW 38
           PFSH+LV+  P   T+    QKW
Sbjct: 102 PFSHLLVLVYPSVFTTAFYHQKW 124


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 200 GIIHYELLPPGRAIDSELY 256
           G +H+ELL   RA+D+E++
Sbjct: 226 GPLHWELLARARAVDNEMF 244


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
 Frame = -3

Query: 600 LLTFGHLVGRDML*KFWGF*-SKYRDN--WFWQSSRDVNLTLPKEF*RDRNRWKSEGARS 430
           LLT+G  VG  +  +F  F  S+ R++  +F+ S  D+N    +E+  D +   S    +
Sbjct: 521 LLTYGIKVGNQIY-EFLAFGNSQLREHGAYFFASGSDLNAKQIREWMGDFSEINSVSKYA 579

Query: 429 ALYGGCINTSQPSSLDFCL 373
           A  G C +T++  +  FC+
Sbjct: 580 ARMGQCFSTTKEIN-RFCV 597


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 47  KKQITGDENWITYDKNVRKRSLSKAGQASQTVAKSELT 160
           KKQ+   ++ IT ++       S+A  ASQTV  S+L+
Sbjct: 168 KKQLRKWDDQITEEEQAALNYSSQASSASQTVDNSQLS 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,222,656
Number of Sequences: 5004
Number of extensions: 66081
Number of successful extensions: 174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)