Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5891
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    39   6e-04
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    33   0.055
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    30   0.29 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    29   0.89 
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    28   1.6  
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    28   1.6  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   2.7  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    27   2.7  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.6  
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||...    27   3.6  
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    26   4.7  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    26   4.7  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    26   6.3  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   6.3  
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    25   8.3  
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch...    25   8.3  

>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 364 MNHKKSRLTDLFRKMDKDNNGLIPRNEFIDGIVNTKFDTSRLEMGAVADLFDRNGSGLID 543
           +N+  S L  LF + DK   G +   + + GI   KF      +  + +L+D NG G +D
Sbjct: 574 INNSSSFLRHLFLRFDKSMTGSLSLQDLVSGIAELKFRDVMRNISFIFELYDFNGDGFMD 633


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 32.7 bits (71), Expect = 0.055
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 379 SRLTDLFRKMDKDNNGLIPRNEFIDGIVNTKFDT-SRLEMGAVADLFDRNGSGLI 540
           + L D+  ++D D NG I   EF+  +     DT +  E+     +FD++G+G I
Sbjct: 48  AELQDMINEVDADGNGTIDFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYI 102



 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +1

Query: 376 KSRLTDLFRKMDKDNNGLIPRNEFIDGIVNTKFDTSRLEMGAVADLFDRNGSGLIDW 546
           +  + + F+  DKD NG I   E    + +     S+ E+  +    D +G G+I++
Sbjct: 84  EEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINY 140


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
 Frame = +1

Query: 304 ELQRVSNFSWDDW-RKRFLKFMNHK------KSRLTDLFRKMDKDNNGLIPRNEFIDGIV 462
           EL ++SN   D    K+F+ F+++K      +      FR  DKDN+G I   +F D + 
Sbjct: 46  ELAKLSNELGDAIDEKKFMSFVSNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMK 105

Query: 463 NTKFDTSRLEMGAVADLFDRNGSGLIDW 546
                 S  E+  +    D   SG  D+
Sbjct: 106 TLGEKLSDNEVQLMVQEADPTNSGSFDY 133


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +1

Query: 376 KSRLTDLFRKMDKDNNGLIPRNEFIDGIVNTKFDTSRLEMGAVADLFDRNGSGLID 543
           +S    LF K+D +N G I   E +   + +  D+   E+  + D  D    G ID
Sbjct: 301 RSNFYQLFSKIDNENKGYIVGGEAVPFFMASHLDSE--ELARIWDTVDTQDRGYID 354


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +1

Query: 19  EGTPGRGSQHDLHRDRSVSPDYYGSRRFSRISPGRETPDRNLPHYGPRFPPK 174
           E     GS H     +S SP +  +R FS  +P   + +RN P Y P  P +
Sbjct: 315 EAVHANGSMHGSLHSKSPSPAFTANR-FSPAAPTTVSSERNAPPY-PSAPTR 364


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 361 FMNHKKSRLTDLFRKMDKDNNGLIPRNEFI 450
           F N +  R+   F K+D + +G I RNEF+
Sbjct: 18  FSNEEIERIRKRFIKIDANQSGSIDRNEFL 47


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 8    KSATKELLGAAPSTTCTGTARSRPTTTDL 94
            ++AT +L    P+TT   TAR++P   D+
Sbjct: 1684 ENATNDLKETFPTTTTISTARAKPGNNDI 1712


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 253 LAWERQRRLHERLAHLKE-LQRVSNFSWDDWRKRFLKFMNHKKSRL 387
           L+ + +R++HERL  LK+ +Q+     W    +R ++F+  +   L
Sbjct: 8   LSRDLERKIHERLVSLKDTIQQTEIEEWPVSTRRAIQFVQERDMSL 53


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 126 LPSRADTTESSRSVVVGRDRAVPVQVVL 43
           LPS+++ + +   VVVG   A+PV VVL
Sbjct: 230 LPSKSNKSSNHVGVVVGCSVAIPVGVVL 257


>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 394 LFRKMDKDNNGLIPRNEFIDGIVNTKFDTSRLEM 495
           +F KMD   N +  R + +   +N++FDT + EM
Sbjct: 111 IFSKMDSMQNDMNSRFDAMQNEMNSRFDTVQNEM 144


>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 20  KELLGAAPSTTCTGTARSRPTTTDLEDSVVSALDGRR-QIGTCPTTDPDSRRREAKAQNR 196
           KEL  AA ST    T++   ++T   DS      G+R +  +  T D DS    ++ + +
Sbjct: 68  KELKNAAISTRQKPTSKKSASSTSKHDSTGVKTSGKRSRESSTVTVDGDSHELPSRIKTQ 127

Query: 197 SS 202
            S
Sbjct: 128 KS 129


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 343 RKRFLKFMNHKKSRLTDLFRKMDKDNNGLIPRNEFIDGIVNTK 471
           +K++ +  N +   LTD F K+D D  G + +   I    ++K
Sbjct: 7   QKKYPELTNEEILTLTDQFNKLDVDGKGYLDQPTTIKAFEDSK 49


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 262 ERQRRLHERLAHLKELQRVSNFSWDDWRK 348
           ER+ +L  +L  LKE Q   + +W++ RK
Sbjct: 372 ERREKLESKLTDLKEEQDKLSAAWEEERK 400


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 251 SHTLRHLSHSCFTRGDLNSGSAPLLP 174
           SHTL  LS    T  +L+S  +PL P
Sbjct: 366 SHTLSELSSPALTSENLSSKPSPLFP 391


>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 394 LFRKMDKDNNGLIPRNEFIDGIVNTKFDTSRLEMGAVADLFDRNGSGLIDW 546
           +F   D D NG I   EFI  +  T       ++     L+D + +GLI +
Sbjct: 68  VFNVFDADKNGYIDFKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISY 118


>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 274

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 310 QRVSNFSWDDWRKRFLKFMNHKKSRLTDLFRKMDKDNN 423
           +R + F     R+R  +    KKSRLT  F++  K++N
Sbjct: 13  ERTNGFDHKHSRRRGSQNRISKKSRLTYKFKRASKEHN 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,656
Number of Sequences: 5004
Number of extensions: 61973
Number of successful extensions: 261
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)