Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5889
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces pom...    28   1.9  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   4.3  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    26   5.7  

>SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -3

Query: 373 EKTKPHPKLMFYLHGTKIIQVKYHTVRV 290
           ++TKP P + F ++GTK+++ K +  RV
Sbjct: 191 DETKPLPLVHFRVYGTKLLKTKTNLPRV 218


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 225 ILVLATSLFSYLSLSLERPCQ 287
           IL L + +FSY+ +S ER CQ
Sbjct: 933 ILCLTSRMFSYIYVSTERMCQ 953


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1201

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 587  ILSGRLFFLDAQINETEKTAD*FKQKKLNKDKILH 691
            ++  +L +   Q+++ EK     KQKKLN  K  H
Sbjct: 1026 LIDAKLLYDCCQVSKREKAYKQLKQKKLNNAKDAH 1060


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,206,881
Number of Sequences: 5004
Number of extensions: 64776
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)