Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5889
         (828 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-8|CAB54444.2|  602|Caenorhabditis elegans Hypothetical ...    29   4.1  
AF025379-1|AAC14017.1|  602|Caenorhabditis elegans acetylcholine...    29   4.1  
U41624-4|AAF99945.1|  322|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z22180-10|CAO82052.1|  360|Caenorhabditis elegans Hypothetical p...    28   9.4  
Z22180-2|CAD54146.1|  392|Caenorhabditis elegans Hypothetical pr...    28   9.4  
Z22180-1|CAA80176.2|  371|Caenorhabditis elegans Hypothetical pr...    28   9.4  

>AL110490-8|CAB54444.2|  602|Caenorhabditis elegans Hypothetical
           protein Y48B6A.7 protein.
          Length = 602

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +2

Query: 683 ILHS*TRYL*YGNPTCNGIHGRNTQDAALNEHSLLKYHFFSIDAIF 820
           I+ S  +Y+ Y +P C   HGR T+  A   + ++  +FFS D+++
Sbjct: 387 IIRSAAKYI-YSDPNCTD-HGRKTRFYAGQMNQIVGDYFFSCDSLW 430


>AF025379-1|AAC14017.1|  602|Caenorhabditis elegans
           acetylcholinesterase protein.
          Length = 602

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +2

Query: 683 ILHS*TRYL*YGNPTCNGIHGRNTQDAALNEHSLLKYHFFSIDAIF 820
           I+ S  +Y+ Y +P C   HGR T+  A   + ++  +FFS D+++
Sbjct: 387 IIRSAAKYI-YSDPNCTD-HGRKTRFYAGQMNQIVGDYFFSCDSLW 430


>U41624-4|AAF99945.1|  322|Caenorhabditis elegans Hypothetical
           protein F46C8.7 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 361 PHPKLMFYLHGTKIIQVKYHTVRVRWHGL 275
           P P L  Y++ T++ +++   +R  WH L
Sbjct: 48  PTPALKHYIYDTRLSKIQKRAIRFTWHRL 76


>Z22180-10|CAO82052.1|  360|Caenorhabditis elegans Hypothetical
           protein K11H3.1d protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 473 FGKYCNSERI*LVLNSRQRNMKPIKAKVCPRTLIV*T 583
           F +  N E++  V+N+R  N+K +  KV P  ++  T
Sbjct: 42  FEEIVNGEKLSEVINNRHENIKYLPGKVLPNNVVAVT 78


>Z22180-2|CAD54146.1|  392|Caenorhabditis elegans Hypothetical
           protein K11H3.1b protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 473 FGKYCNSERI*LVLNSRQRNMKPIKAKVCPRTLIV*T 583
           F +  N E++  V+N+R  N+K +  KV P  ++  T
Sbjct: 74  FEEIVNGEKLSEVINNRHENIKYLPGKVLPNNVVAVT 110


>Z22180-1|CAA80176.2|  371|Caenorhabditis elegans Hypothetical
           protein K11H3.1a protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 473 FGKYCNSERI*LVLNSRQRNMKPIKAKVCPRTLIV*T 583
           F +  N E++  V+N+R  N+K +  KV P  ++  T
Sbjct: 62  FEEIVNGEKLSEVINNRHENIKYLPGKVLPNNVVAVT 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,351,246
Number of Sequences: 27780
Number of extensions: 348060
Number of successful extensions: 629
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)