Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5887
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 31 0.19
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 27 2.3
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 27 3.1
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 4.0
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 4.0
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 26 5.3
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 25 7.1
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 25 9.3
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.3
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 25 9.3
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 30.7 bits (66), Expect = 0.19
Identities = 26/112 (23%), Positives = 56/112 (50%)
Frame = -3
Query: 556 SPSNNNANSQRP*GIRSLVSVGASFLKKHCHSTLCMAGAPQSWPNASTISSMSLVRRNTD 377
SP ++++S P SLVS ++ L HS+L + S ++++S +L+ ++
Sbjct: 689 SPVASSSSSPIP-SSSSLVSTYSASLSNITHSSLSLTAMSSSSAIPTSVNSSTLITASSS 747
Query: 376 SQVLRQL*ESDSWQHGRYLDVSPTTVEDVKSLRQCSSSGDCSQASTAASFAS 221
+ +L + S + VS TTV ++ S +++ SQ + +++ A+
Sbjct: 748 NTLLSSITSSSA-------IVSSTTVSNISSNLPSATASSQSQLTNSSTLAT 792
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 626 NISHFSCDPLLNVWKHSSLHVADFAFKQQCKFATSLGNQI 507
N H+SCDPL N K S F ++ K +L +Q+
Sbjct: 10 NTFHWSCDPLFNELKRLSC-FKSFTYENDLKTFKALRSQL 48
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 67 PNPVVDLTK*PCSTAWINNRRLSGAVH 147
PN D+ P S +W N +SG+VH
Sbjct: 462 PNESHDIASEPFSISWPQNPSISGSVH 488
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 26.2 bits (55), Expect = 4.0
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = -1
Query: 486 LSSKSIATVHYVWR----ELHSLGPMPLRSLLCHWSDATQTHKYFDSFENRIHGSMEDI* 319
L + ++ + ++W + HSL PL+ L C + + H N + GS+++
Sbjct: 1910 LRIRPVSKLGFLWSNQIVDWHSLNKSPLQYLTCESTSTSWKHNLLVFARNLMDGSLQNDY 1969
Query: 318 TCLQL 304
LQL
Sbjct: 1970 PFLQL 1974
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +1
Query: 28 GLRALVLWTRKPSPN--PVVDLTK*PCSTAWINNRRLSGAV 144
GL +V W P P P +D W+ RR +GA+
Sbjct: 812 GLDRVVEWMLSPEPRNRPTIDQILATDEVCWVEMRRKAGAI 852
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 213 CASVPASSTLSGTLRDTTQTASVNSTTEPPVVY 115
C S P+S+ D+ A NS T PP++Y
Sbjct: 313 CPSTPSSAVTLSNGFDSQSNAYNNSGTGPPMLY 345
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -1
Query: 540 MQIRNVPRESDPWCPSVHLSSKSIATVHY 454
++++ +P PW PS+ +SS S+ + Y
Sbjct: 350 LKLKFLPPHKLPWIPSLDVSSFSLPPIDY 378
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = -3
Query: 451 MAGAPQSWPNASTISSMSLVRRNTDSQVLRQL*ESDSWQHGRYLDVSPTTVEDV 290
+A PQ+WPN S + ++ + +L + S HG + T+ED+
Sbjct: 327 LATLPQTWPNTSCLDLLNYCQEGKSHMIL--ISNSPGEPHGA---IGVITLEDI 375
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 9.3
Identities = 23/83 (27%), Positives = 35/83 (42%)
Frame = -3
Query: 463 STLCMAGAPQSWPNASTISSMSLVRRNTDSQVLRQL*ESDSWQHGRYLDVSPTTVEDVKS 284
S+L + P + ++S+ SS SL ++ S S SPT+ S
Sbjct: 233 SSLSTSSIPSTSSSSSSTSS-SLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTIS 291
Query: 283 LRQCSSSGDCSQASTAASFASPS 215
SSS S +ST +S +S S
Sbjct: 292 SSSSSSSSPTSTSSTISSSSSSS 314
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +3
Query: 255 QSPELLHCLRDLTSSTVVGDTSKYLPCCH 341
+ P LHC S+ + GD + + CH
Sbjct: 32 KEPNRLHCFYTKKSTLIHGDEGESISLCH 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,464
Number of Sequences: 5004
Number of extensions: 55145
Number of successful extensions: 188
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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