Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5887
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1121 + 8893177-8893199,8893260-8893287,8893656-8893730,889... 29 3.2
01_01_0595 - 4430738-4430785,4430904-4432679 29 4.2
01_06_1742 - 39585879-39585994,39586089-39586238,39586288-395863... 28 5.5
06_03_1273 + 28892774-28893946,28894964-28895104,28895277-288953... 28 7.3
02_01_0614 - 4599035-4599083,4599209-4599303,4599410-4599494,460... 28 7.3
11_01_0284 + 2107562-2107811,2107928-2108208,2108589-2109413 27 9.7
10_02_0061 - 4812903-4812940,4813140-4813536 27 9.7
06_03_0783 - 24546403-24546765,24547202-24547262,24547899-245480... 27 9.7
05_04_0453 + 21380962-21382320 27 9.7
04_01_0058 + 592846-593185,594641-595182,596298-596987,597078-59... 27 9.7
02_01_0006 - 42752-43816 27 9.7
01_06_1810 - 40049677-40049951,40050032-40050112,40050201-400503... 27 9.7
>01_01_1121 +
8893177-8893199,8893260-8893287,8893656-8893730,
8894748-8894813,8894917-8894959,8895102-8895150,
8895899-8895992,8896078-8896130,8896921-8897005,
8897242-8897344,8897421-8897513,8897985-8898051,
8898309-8898375,8898463-8898516,8898632-8898766
Length = 344
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 441 APAIHNVLWQCFLRKDAPTDTKDLIP 518
+P I NV+W+C + + +P + LIP
Sbjct: 197 SPTILNVIWRCEIARSSPYEVNILIP 222
>01_01_0595 - 4430738-4430785,4430904-4432679
Length = 607
Score = 28.7 bits (61), Expect = 4.2
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +3
Query: 336 CHESDSQSCRSTCESVLRRTSDIEEIVEA 422
C ES Q C +C ++ + S++E + +A
Sbjct: 333 CRESKDQECNQSCSAISAKQSEVEALEKA 361
>01_06_1742 - 39585879-39585994,39586089-39586238,39586288-39586375,
39586479-39586640,39586753-39586877,39586992-39587030,
39587290-39587476,39587643-39587713,39589371-39589564,
39589656-39589767,39589899-39590082,39590177-39590503,
39590780-39591061,39591148-39591621,39591730-39591813,
39591850-39591939,39592024-39592247,39592503-39592600,
39592679-39593169,39593249-39593520,39594266-39594522,
39594672-39594890,39595007-39595167,39595249-39595441,
39595528-39595633,39595947-39596121,39596404-39596556,
39596663-39596794,39597120-39597184,39597754-39597819,
39598433-39598511,39598587-39598767,39598864-39598976
Length = 1889
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 147 QTQSVSCHEACQKVLRRLGHSR-IDGDAKEAAVD 245
Q S+ CH C L +LG R + G ++AA D
Sbjct: 1029 QLSSIRCHMICNATLYKLGIERNVQGYVRDAAFD 1062
>06_03_1273 +
28892774-28893946,28894964-28895104,28895277-28895329,
28895852-28895966
Length = 493
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -1
Query: 534 IRNVPRESDPWCPSVHLSSKSIATVHYVWRELHSLGPMP 418
+R+ P P CP+ S S A V V+RE P P
Sbjct: 128 LRDTPPPPTPRCPAPIKSCSSPAPVSSVFREFRDAAPSP 166
>02_01_0614 -
4599035-4599083,4599209-4599303,4599410-4599494,
4600107-4600196,4600772-4600879,4600983-4601197
Length = 213
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +3
Query: 351 SQSCRSTCESVLRRTSDIEEIVEALGQDCGAPAIHNVL--WQCFLRKDAPTDTKDLIP*G 524
S+S CES+ + + + EE+ E + Q A + L W ++ PT+ ++ + G
Sbjct: 151 SESLYGACESMYKPSMEPEELFETISQALQASVDRDCLSGWGGYVLLVTPTEVQERVIKG 210
Query: 525 RCE 533
R +
Sbjct: 211 RMD 213
>11_01_0284 + 2107562-2107811,2107928-2108208,2108589-2109413
Length = 451
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +3
Query: 255 QSPELLHCLRDLTSSTVVGDTSKYLPCCHESDSQSCR 365
Q+P + + +GD S + PCC + + SCR
Sbjct: 293 QNPNPAMLYSNQLEPSYIGDQSMFTPCCCDRNCISCR 329
>10_02_0061 - 4812903-4812940,4813140-4813536
Length = 144
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = -1
Query: 237 LLPSRRHRCASVPASSTLSGTLRDTTQTASVNS----TTEPPVVYPCSRT 100
LLP R CA PA S + T + T+ A+++ E V C+RT
Sbjct: 70 LLPRSRSPCAPAPALSAFTVTFFEITRRAAMSGREAVVLERGTVMSCART 119
>06_03_0783 - 24546403-24546765,24547202-24547262,24547899-24548004,
24548118-24551600,24553134-24553179
Length = 1352
Score = 27.5 bits (58), Expect = 9.7
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Frame = -1
Query: 597 VECVETQFLARC*FRLQTTMQIRNVPRESDPWCPSVHLSSKSIATVHY----VWRELHSL 430
+EC++T F F T+Q+ +P +D WC SV + + V +EL +
Sbjct: 870 LECIDTSFYGDVGFPSLETLQLTQLPELAD-WC-SVDYAFPVLQVVFIRRCPKLKELPPV 927
Query: 429 GPMP-----LRSLLCHW 394
P P L S++C W
Sbjct: 928 FPPPVKLKVLESIICMW 944
>05_04_0453 + 21380962-21382320
Length = 452
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 216 DGDAKEAAVDACEQSPELLHCLRDLTSSTVV 308
D DAK A D E P+L+ L+D S +
Sbjct: 260 DADAKTAIADRSELFPDLVRILKDAASPAAI 290
>04_01_0058 +
592846-593185,594641-595182,596298-596987,597078-597233,
597277-597856,598601-598764,598907-599100,599702-599750,
599777-599806
Length = 914
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 441 APAIHNVLWQCFLRKDAPTDTKDLIP*GRCEFALLFEGEI 560
+PA+ CF+ +D P D KD P R A L + EI
Sbjct: 552 SPALQLATMHCFILQDPPNDLKD--PPNRVAIANLTDWEI 589
>02_01_0006 - 42752-43816
Length = 354
Score = 27.5 bits (58), Expect = 9.7
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Frame = -3
Query: 481 LKKHCHSTLCM---AGAPQSWPNASTI---SSMSLVRRN----TDSQVLRQL*ESDSWQH 332
L++ C +C A + QSW ++ +S ++R +Q+LR+ S+SW+H
Sbjct: 183 LRQSCEWIVCCDATADSRQSWDGSADAPPPNSNPIIRARGFVTRPAQMLRRS-LSESWRH 241
Query: 331 GRYLDVSPTTVEDVKSL---RQCSSSGDCSQASTAAS 230
R PT V S + S GD S AA+
Sbjct: 242 ARSRPAVPTKAASVSSAGMDSEISLGGDSSSIHAAAA 278
>01_06_1810 -
40049677-40049951,40050032-40050112,40050201-40050371,
40050434-40050497,40050689-40050777,40051244-40051378,
40051464-40051515
Length = 288
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 4/23 (17%)
Frame = -1
Query: 522 PRESDPWCP----SVHLSSKSIA 466
P+ES+P CP SVHLSS ++A
Sbjct: 141 PQESEPQCPPEDMSVHLSSPAVA 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,704,126
Number of Sequences: 37544
Number of extensions: 399704
Number of successful extensions: 1383
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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