Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5886
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    27   3.8  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    26   6.6  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    25   8.7  
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    25   8.7  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.7  

>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 300 APQPFVFIYTYPFSEGGYTI 359
           +PQPFV  Y+Y    GG+ +
Sbjct: 379 SPQPFVNFYSYLLGRGGHVV 398


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 623  TQMYVRATVVFEDESQAEKRVERCIQHKL 709
            T+   R T   + E+QAE+RV R I+H L
Sbjct: 1141 TEAEKRDTERMQAETQAEQRVARVIKHPL 1169


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 253 YMTG*THSTIFIVLFGPHNHLSS 321
           Y+T  T S + +  FGPH +LS+
Sbjct: 92  YITAETPSVLLVKKFGPHYYLSA 114


>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +3

Query: 690 DASSTNSAVPIKARTAS 740
           +A STN+A P+KAR+A+
Sbjct: 661 EAPSTNNAEPVKARSAT 677


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 172 AHSPPGVKWLLEPIDIYNLNAPHTLR 95
           A  PP +K    P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,309
Number of Sequences: 5004
Number of extensions: 55022
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)