Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5886
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0469 - 3613062-3613745,3613952-3614512,3614600-3614690,361...    30   2.2  
04_04_1344 + 32787574-32787632,32788488-32789070,32789211-327894...    29   5.2  

>03_01_0469 -
           3613062-3613745,3613952-3614512,3614600-3614690,
           3614782-3614870,3614962-3615027,3615309-3615423,
           3615521-3615966
          Length = 683

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +1

Query: 445 PRTAASQGRSRAIQLQRRNPQQGYTQEEILVLAQAEPDLREHGDRLR-CPVQLGAGG 612
           P T   +  S   +LQR+ P +    +  L    AE D    GDRL  C V L  GG
Sbjct: 515 PATPVMKRSSSGNRLQRKRPPRLTLDKSRLAKGVAEQDAGSFGDRLDFCKVNLFRGG 571


>04_04_1344 +
           32787574-32787632,32788488-32789070,32789211-32789423,
           32789884-32790173,32791201-32791312,32791394-32791630,
           32791714-32792394
          Length = 724

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 19  CREAVMRFGLKGGAAVMTILRP*NYISRCVAHLSCRCLWAPVTTLHQVG 165
           C     +FG+   A V  ILRP N+IS+      C C W  +  L  +G
Sbjct: 342 CSTNSFQFGIFEQALVSGILRPGNFISKI-----CYCFWWGLQNLSTLG 385


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,489,723
Number of Sequences: 37544
Number of extensions: 367984
Number of successful extensions: 847
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)