Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5886
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19152-11|CAA79540.2| 1003|Caenorhabditis elegans Hypothetical p...    29   2.6  
Z19152-6|CAA79542.2|  774|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z19152-5|CAA79541.1|  698|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF241656-1|AAG36873.1|  698|Caenorhabditis elegans SR protein sp...    29   2.6  

>Z19152-11|CAA79540.2| 1003|Caenorhabditis elegans Hypothetical
           protein B0464.5a protein.
          Length = 1003

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 714 LQSLCWMHLSTLFSAWDSSSKTTVARTYICVTARSTSSQLN 592
           ++ L W H ST++ AWD+  K  VA   +      T + L+
Sbjct: 425 IRKLGWGHFSTVWLAWDTQDKRFVAMKIVKSAEHYTEAALD 465


>Z19152-6|CAA79542.2|  774|Caenorhabditis elegans Hypothetical
           protein B0464.5c protein.
          Length = 774

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 714 LQSLCWMHLSTLFSAWDSSSKTTVARTYICVTARSTSSQLN 592
           ++ L W H ST++ AWD+  K  VA   +      T + L+
Sbjct: 137 IRKLGWGHFSTVWLAWDTQDKRFVAMKIVKSAEHYTEAALD 177


>Z19152-5|CAA79541.1|  698|Caenorhabditis elegans Hypothetical
           protein B0464.5b protein.
          Length = 698

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 714 LQSLCWMHLSTLFSAWDSSSKTTVARTYICVTARSTSSQLN 592
           ++ L W H ST++ AWD+  K  VA   +      T + L+
Sbjct: 137 IRKLGWGHFSTVWLAWDTQDKRFVAMKIVKSAEHYTEAALD 177


>AF241656-1|AAG36873.1|  698|Caenorhabditis elegans SR protein
           specfic kinase SPK-1 protein.
          Length = 698

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 714 LQSLCWMHLSTLFSAWDSSSKTTVARTYICVTARSTSSQLN 592
           ++ L W H ST++ AWD+  K  VA   +      T + L+
Sbjct: 137 IRKLGWGHFSTVWLAWDTQDKRFVAMKIVKSAEHYTEAALD 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,381,163
Number of Sequences: 27780
Number of extensions: 319932
Number of successful extensions: 753
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)