Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5886
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   2.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   3.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   4.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   7.0  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   7.0  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   7.0  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   7.0  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   7.0  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   7.0  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   7.0  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   7.0  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   7.0  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 6/27 (22%), Positives = 18/27 (66%)
 Frame = +2

Query: 542 HKLNRIYVNMETDFAVQFNWELVDLAV 622
           H +N++ ++ + D   + +W++ D+A+
Sbjct: 234 HSINKVIIHPKYDIIEKDDWQINDIAL 260


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 421 KQFLSSWTPRTAASQGRSRAIQLQRRNPQQGYTQEE 528
           K+F SS   R + S  RS +  L    P Q + +E+
Sbjct: 26  KRFSSSIVDRRSPSSSRSPSPSLLTSQPHQDHNKEK 61


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 376 HSNVNLIVYPPSENGY 329
           ++ VNL+ YPP    Y
Sbjct: 179 YTKVNLVEYPPESGNY 194


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 298 GPHNHLSSYTHTH 336
           GPH+H   + H+H
Sbjct: 413 GPHHHTMGHGHSH 425


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 197 FYSFDVWTSSQPTW 156
           +Y FDV T   P W
Sbjct: 115 YYEFDVATKEPPPW 128


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -3

Query: 631 HLRHGEVHQLPVELDSEVGLHVHVDPVQLVREQEFLL 521
           H  H E  +     DSE GL       +L R +E+++
Sbjct: 8   HSHHDERFRQSRSEDSETGLRSRTQEERLRRRREWMI 44


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -3

Query: 631 HLRHGEVHQLPVELDSEVGLHVHVDPVQLVREQEFLL 521
           H  H E  +     DSE GL       +L R +E+++
Sbjct: 8   HSHHDERFRQSRSEDSETGLRSRTQEERLRRRREWMI 44


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -3

Query: 631 HLRHGEVHQLPVELDSEVGLHVHVDPVQLVREQEFLL 521
           H  H E  +     DSE GL       +L R +E+++
Sbjct: 8   HSHHDERFRQSRSEDSETGLRSRTQEERLRRRREWMI 44


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -3

Query: 631 HLRHGEVHQLPVELDSEVGLHVHVDPVQLVREQEFLL 521
           H  H E  +     DSE GL       +L R +E+++
Sbjct: 8   HSHHDERFRQSRSEDSETGLRSRTQEERLRRRREWMI 44


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -3

Query: 631 HLRHGEVHQLPVELDSEVGLHVHVDPVQLVREQEFLL 521
           H  H E  +     DSE GL       +L R +E+++
Sbjct: 8   HSHHDERFRQSRSEDSETGLRSRTQEERLRRRREWMI 44


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -3

Query: 631 HLRHGEVHQLPVELDSEVGLHVHVDPVQLVREQEFLL 521
           H  H E  +     DSE GL       +L R +E+++
Sbjct: 8   HSHHDERFRQSRSEDSETGLRSRTQEERLRRRREWMI 44


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -3

Query: 631 HLRHGEVHQLPVELDSEVGLHVHVDPVQLVREQEFLL 521
           H  H E  +     DSE GL       +L R +E+++
Sbjct: 8   HSHHDERFRQSRSEDSETGLRSRTQEERLRRRREWMI 44


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -3

Query: 631 HLRHGEVHQLPVELDSEVGLHVHVDPVQLVREQEFLL 521
           H  H E  +     DSE GL       +L R +E+++
Sbjct: 8   HSHHDERFRQSRSEDSETGLRSRTQEERLRRRREWMI 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,423
Number of Sequences: 438
Number of extensions: 3892
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)