Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5885
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29382-2|AAF99999.1|  147|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t...    28   6.2  
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t...    28   6.2  
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t...    28   6.2  

>U29382-2|AAF99999.1|  147|Caenorhabditis elegans Hypothetical
           protein R03H10.4 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 542 TVYTNACYVTLCIPCPNRIQTLI 610
           ++Y   C+V +  PCP+ ++TL+
Sbjct: 13  SIYCEGCHVQIRCPCPDMLETLV 35


>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 2 protein.
          Length = 1785

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = -3

Query: 210 EFIEYSVMSLSDI*FKVRYLSSGWCNPAKCNTFT*KIRQVKDFSEGAMWRSVI 52
           EF+E S  ++ +I FKVR + SG   P+K    T  IR V   S   +  S++
Sbjct: 710 EFVETSDDTIQEIGFKVRSMLSG-RGPSKETRITTTIRHVGQLSNKTILTSML 761


>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1763

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = -3

Query: 210 EFIEYSVMSLSDI*FKVRYLSSGWCNPAKCNTFT*KIRQVKDFSEGAMWRSVI 52
           EF+E S  ++ +I FKVR + SG   P+K    T  IR V   S   +  S++
Sbjct: 688 EFVETSDDTIQEIGFKVRSMLSG-RGPSKETRITTTIRHVGQLSNKTILTSML 739


>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1785

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = -3

Query: 210 EFIEYSVMSLSDI*FKVRYLSSGWCNPAKCNTFT*KIRQVKDFSEGAMWRSVI 52
           EF+E S  ++ +I FKVR + SG   P+K    T  IR V   S   +  S++
Sbjct: 710 EFVETSDDTIQEIGFKVRSMLSG-RGPSKETRITTTIRHVGQLSNKTILTSML 761


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,163,903
Number of Sequences: 27780
Number of extensions: 334713
Number of successful extensions: 618
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)