Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5880
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0068 - 20661060-20661506,20662702-20662824,20663513-206637...    28   5.7  
03_01_0401 - 3108477-3108689,3108787-3108933,3109022-3109234,310...    28   5.7  

>09_06_0068 -
           20661060-20661506,20662702-20662824,20663513-20663770,
           20665635-20666027
          Length = 406

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 576 YITERKKKVNKIVSGERGQTITTVCCVSTT 487
           +  +R+   +K  SG RG T TTV  VST+
Sbjct: 6   WFKKRRSSKSKESSGRRGSTTTTVSAVSTS 35


>03_01_0401 -
           3108477-3108689,3108787-3108933,3109022-3109234,
           3109321-3109938,3110045-3110584,3110941-3111041,
           3111208-3111325,3111450-3111535,3111888-3112002
          Length = 716

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -1

Query: 456 PRKKMKSELMDGAPTGSIGMTSDSEFINADLYLQWLHHFKDHISPTA 316
           P   +K  +++      +  + D++ +N D  +Q L  FK+H+S T+
Sbjct: 572 PNNILKHIILENNENKPVTNSRDTQEVNLDQGIQMLKIFKEHVSKTS 618


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,882,666
Number of Sequences: 37544
Number of extensions: 377188
Number of successful extensions: 933
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)