Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5880
         (660 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    25   1.6  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    25   2.1  
AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic acetylch...    25   2.8  
AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    24   3.7  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    24   3.7  
AF387858-1|AAL58708.1|  209|Anopheles gambiae integrase protein.       24   3.7  
AF387857-1|AAL58707.1|  215|Anopheles gambiae integrase protein.       24   3.7  
AF387850-1|AAL58705.1|  209|Anopheles gambiae integrase protein.       24   3.7  
L04753-1|AAA29357.1|  511|Anopheles gambiae alpha-amylase protein.     24   4.9  
AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.           23   8.5  

>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 413 LAVLV*HLIRNSSTRIYICNGFIISRTIFHQL 318
           L+VLV +L  +S  +I +C   ++S+T+F  L
Sbjct: 269 LSVLVFYLPADSGEKIALCISILLSQTMFFLL 300


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 413 LAVLV*HLIRNSSTRIYICNGFIISRTIFHQL 318
           L+VLV +L  +S  +I +C   ++S T+F  L
Sbjct: 256 LSVLVFYLPSDSGEKISLCISILLSLTVFFLL 287


>AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 8 protein.
          Length = 520

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 413 LAVLV*HLIRNSSTRIYICNGFIISRTIFHQL 318
           L VLV +L  +S  ++ +C   ++S T+F  L
Sbjct: 262 LTVLVFYLPSDSGEKVTLCISILVSLTVFFLL 293


>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -1

Query: 348 HHFKDHISPTADNPVLLIIDNHSNHISLHCRQHN 247
           HH   H+SP   + V      HS+H   H   H+
Sbjct: 475 HHSPHHVSPGMGSTVNGASLTHSHHAHPHHHHHH 508


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 614 TGIVSVPKKTHKVISPKGKKKLIKLFLEN 528
           + IV VP +    + PKGKK +   + +N
Sbjct: 246 SAIVHVPAEKRSKLDPKGKKLIFVGYADN 274


>AF387858-1|AAL58708.1|  209|Anopheles gambiae integrase protein.
          Length = 209

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 614 TGIVSVPKKTHKVISPKGKKKLIKLFLEN 528
           + IV VP +    + PKGKK +   + +N
Sbjct: 16  SAIVHVPAEKRSKLDPKGKKLMFVGYADN 44


>AF387857-1|AAL58707.1|  215|Anopheles gambiae integrase protein.
          Length = 215

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 614 TGIVSVPKKTHKVISPKGKKKLIKLFLEN 528
           + IV VP +    + PKGKK +   + +N
Sbjct: 16  SAIVHVPAEKRSKLDPKGKKLMFVGYADN 44


>AF387850-1|AAL58705.1|  209|Anopheles gambiae integrase protein.
          Length = 209

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 614 TGIVSVPKKTHKVISPKGKKKLIKLFLEN 528
           + IV VP +    + PKGKK +   + +N
Sbjct: 16  SAIVHVPAEKRSKLDPKGKKLIFVGYADN 44


>L04753-1|AAA29357.1|  511|Anopheles gambiae alpha-amylase protein.
          Length = 511

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 360 LQWLHHFKDHISPTADNPVLLIIDNHSN 277
           L+WL +F +     A     + +DNH N
Sbjct: 292 LRWLSNFGEAWRLLASREAFVFVDNHDN 319


>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
          Length = 1459

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 303 LLIIDNHSNHISLHCRQH 250
           L + DNH  H+  HC  H
Sbjct: 656 LFLNDNHIVHVEPHCFTH 673


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 723,961
Number of Sequences: 2352
Number of extensions: 15629
Number of successful extensions: 44
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 65650335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)