Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5880
(660 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U49973-1|AAB61714.1| 454|Homo sapiens putative transposase prot... 37 0.055
BC063500-1|AAH63500.2| 591|Homo sapiens tigger transposable ele... 36 0.13
AK056329-1|BAB71153.1| 591|Homo sapiens protein ( Homo sapiens ... 36 0.13
AC092165-4|AAY24104.1| 591|Homo sapiens unknown protein. 36 0.13
BC109202-1|AAI09203.1| 524|Homo sapiens jerky homolog-like (mou... 35 0.30
AF004715-1|AAB65833.1| 442|Homo sapiens jerky gene product homo... 35 0.30
BC035143-1|AAH35143.2| 591|Homo sapiens tigger transposable ele... 33 0.90
AC104785-1|AAY40951.1| 525|Homo sapiens unknown protein. 32 1.6
AK027513-1|BAB55167.1| 168|Homo sapiens protein ( Homo sapiens ... 31 2.8
BT006783-1|AAP35429.1| 93|Homo sapiens chemokine (C-C motif) l... 30 8.4
BC007783-1|AAH07783.1| 93|Homo sapiens chemokine (C-C motif) l... 30 8.4
>U49973-1|AAB61714.1| 454|Homo sapiens putative transposase
protein.
Length = 454
Score = 37.1 bits (82), Expect = 0.055
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 10/88 (11%)
Frame = -1
Query: 393 SDSEFINADLYLQWLHHFKDHISPTADN---------PVLLIIDNHSNHISLHCRQHNMI 241
++ ++ A L+ W F ++ PT + +LL+IDN H + I
Sbjct: 262 NNKAWMTAHLFTAW---FTEYFKPTVETYCSEKKISFKILLLIDNAPGHPRALMEMYKEI 318
Query: 240 -VLTLPPHSSHKLQPLDRGVYSPLKSQY 160
V+ +P +++ LQP+D+GV S KS Y
Sbjct: 319 NVVFMPANTTSILQPMDQGVISTFKSYY 346
>BC063500-1|AAH63500.2| 591|Homo sapiens tigger transposable
element derived 1 protein.
Length = 591
Score = 35.9 bits (79), Expect = 0.13
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = -1
Query: 306 VLLIIDNHSNHISLHCRQHNMI-VLTLPPHSSHKLQPLDRGVYSPLKSQY 160
+LL+IDN +H + I V+ +P +++ LQP+D+GV S KS Y
Sbjct: 297 ILLLIDNAPSHPRALMEIYEEINVIFMPANTTSILQPMDQGVISTFKSYY 346
>AK056329-1|BAB71153.1| 591|Homo sapiens protein ( Homo sapiens
cDNA FLJ31767 fis, clone NT2RI2007884, weakly similar to
ARS BINDING PROTEIN 1. ).
Length = 591
Score = 35.9 bits (79), Expect = 0.13
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = -1
Query: 306 VLLIIDNHSNHISLHCRQHNMI-VLTLPPHSSHKLQPLDRGVYSPLKSQY 160
+LL+IDN +H + I V+ +P +++ LQP+D+GV S KS Y
Sbjct: 297 ILLLIDNAPSHPRALMEIYEEINVIFMPANTTSILQPMDQGVISTFKSYY 346
>AC092165-4|AAY24104.1| 591|Homo sapiens unknown protein.
Length = 591
Score = 35.9 bits (79), Expect = 0.13
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = -1
Query: 306 VLLIIDNHSNHISLHCRQHNMI-VLTLPPHSSHKLQPLDRGVYSPLKSQY 160
+LL+IDN +H + I V+ +P +++ LQP+D+GV S KS Y
Sbjct: 297 ILLLIDNAPSHPRALMEIYEEINVIFMPANTTSILQPMDQGVISTFKSYY 346
>BC109202-1|AAI09203.1| 524|Homo sapiens jerky homolog-like (mouse)
protein.
Length = 524
Score = 34.7 bits (76), Expect = 0.30
Identities = 28/133 (21%), Positives = 59/133 (44%), Gaps = 12/133 (9%)
Frame = -1
Query: 522 QTITTVCCVSTTGNYVPPAFIFPRKKMKSELMDGAPTGSIGMTSDSE---FINADLYLQW 352
+ +T +CC + TG + + + K K T ++ ++ S+ +++ ++ QW
Sbjct: 207 ERVTIMCCANATGLHKLKLCVVGKAK-KPRSFKSTDTLNLPVSYFSQKGAWMDLSIFRQW 265
Query: 351 LHHF-----KDHI-SPTADNPVLLIIDN---HSNHISLHCRQHNMIVLTLPPHSSHKLQP 199
++++ S +L++DN H N L + LPP+ + +QP
Sbjct: 266 FDKIFVPQVREYLRSKGLQEKAVLLLDNSPTHPNENVLRSDDGQIFAKYLPPNVASLIQP 325
Query: 198 LDRGVYSPLKSQY 160
D+GV + +K Y
Sbjct: 326 SDQGVIATMKRNY 338
>AF004715-1|AAB65833.1| 442|Homo sapiens jerky gene product homolog
protein.
Length = 442
Score = 34.7 bits (76), Expect = 0.30
Identities = 28/133 (21%), Positives = 59/133 (44%), Gaps = 12/133 (9%)
Frame = -1
Query: 522 QTITTVCCVSTTGNYVPPAFIFPRKKMKSELMDGAPTGSIGMTSDSE---FINADLYLQW 352
+ +T +CC + TG + + + K K T ++ ++ S+ +++ ++ QW
Sbjct: 125 ERVTIMCCANATGLHKLKLCVVGKAK-KPRSFKSTDTLNLPVSYFSQKGAWMDLSIFRQW 183
Query: 351 LHHF-----KDHI-SPTADNPVLLIIDN---HSNHISLHCRQHNMIVLTLPPHSSHKLQP 199
++++ S +L++DN H N L + LPP+ + +QP
Sbjct: 184 FDKIFVPQVREYLRSKGLQEKAVLLLDNSPTHPNENVLRSDDGQIFAKYLPPNVASLIQP 243
Query: 198 LDRGVYSPLKSQY 160
D+GV + +K Y
Sbjct: 244 SDQGVIATMKRNY 256
>BC035143-1|AAH35143.2| 591|Homo sapiens tigger transposable
element derived 1 protein.
Length = 591
Score = 33.1 bits (72), Expect = 0.90
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -1
Query: 306 VLLIIDNHSNHISLHCRQHNMI-VLTLPPHSSHKLQPLDRGVYSPLKSQY 160
+LL+I N +H + I V+ +P +++ LQP+D+GV S KS Y
Sbjct: 297 ILLLIGNAPSHPRALMEIYEEINVIFMPANTTSILQPMDQGVISTFKSYY 346
>AC104785-1|AAY40951.1| 525|Homo sapiens unknown protein.
Length = 525
Score = 32.3 bits (70), Expect = 1.6
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 12/133 (9%)
Frame = -1
Query: 522 QTITTVCCVSTTGNYVPPAFIFPRKKMKSELMDGAPTGSIGMTSDSE---FINADLYLQW 352
+ I +CC + TG + + + K K G ++ +T S+ +I ++ QW
Sbjct: 207 ERIIIMCCANATGLHKLNLCVVGKAK-KPRAFKGTDLSNLPVTYYSQKGAWIEQSVFRQW 265
Query: 351 LHHF-----KDHI-SPTADNPVLLIID---NHSNHISLHCRQHNMIVLTLPPHSSHKLQP 199
+ + H+ S +L++D N L +IV LPP+ + +QP
Sbjct: 266 FEKYFVPQVQKHLKSKGLLEKAVLLLDFPPARPNEEMLSSDDGRIIVKYLPPNVTSLIQP 325
Query: 198 LDRGVYSPLKSQY 160
+ +GV + +K Y
Sbjct: 326 MSQGVLATVKRYY 338
>AK027513-1|BAB55167.1| 168|Homo sapiens protein ( Homo sapiens
cDNA FLJ14607 fis, clone NT2RP1000609. ).
Length = 168
Score = 31.5 bits (68), Expect = 2.8
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = -1
Query: 378 INADLYLQWLHHFKDHISPTADNPVLLIIDNHSNHISLHCRQHNMIVLTLPPHSSHKLQP 199
I+ + Y W F ++ T + D S H+SL H + T+P H+ HK+ P
Sbjct: 71 IDQEAYRDW---FSSQLTATCNVEQSFFNDWFSGHLSLQIEHH--LFPTMPRHNLHKIAP 125
Query: 198 L 196
L
Sbjct: 126 L 126
>BT006783-1|AAP35429.1| 93|Homo sapiens chemokine (C-C motif)
ligand 3 protein.
Length = 93
Score = 29.9 bits (64), Expect = 8.4
Identities = 18/78 (23%), Positives = 32/78 (41%)
Frame = -1
Query: 549 NKIVSGERGQTITTVCCVSTTGNYVPPAFIFPRKKMKSELMDGAPTGSIGMTSDSEFINA 370
N+++S T CC S T +P FI + S+ + I +T + A
Sbjct: 19 NQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQC---SKPSVIFLTKRGRQVCA 75
Query: 369 DLYLQWLHHFKDHISPTA 316
D +W+ + + P+A
Sbjct: 76 DPSEEWVQKYVSDLEPSA 93
>BC007783-1|AAH07783.1| 93|Homo sapiens chemokine (C-C motif)
ligand 3-like 3 protein.
Length = 93
Score = 29.9 bits (64), Expect = 8.4
Identities = 18/78 (23%), Positives = 32/78 (41%)
Frame = -1
Query: 549 NKIVSGERGQTITTVCCVSTTGNYVPPAFIFPRKKMKSELMDGAPTGSIGMTSDSEFINA 370
N+++S T CC S T +P FI + S+ + I +T + A
Sbjct: 19 NQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQC---SKPSVIFLTKRGRQVCA 75
Query: 369 DLYLQWLHHFKDHISPTA 316
D +W+ + + P+A
Sbjct: 76 DPSEEWVQKYVSDLEPSA 93
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,859,492
Number of Sequences: 237096
Number of extensions: 2170565
Number of successful extensions: 4527
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4523
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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