Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5880
(660 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35400-1|CAA84584.1| 532|Caenorhabditis elegans putative transp... 31 0.55
U12433-1|AAA20582.1| 532|Caenorhabditis elegans putative transp... 31 0.55
Z70680-2|CAA94573.1| 424|Caenorhabditis elegans Hypothetical pr... 30 1.7
U41263-5|AAC24427.1| 400|Caenorhabditis elegans Hypothetical pr... 29 3.9
U97015-5|AAB52344.2| 362|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z82078-9|CAE11308.1| 949|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z82078-8|CAB04948.2| 947|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z81123-5|CAB76411.2| 393|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z50071-9|CAA90404.3| 393|Caenorhabditis elegans Hypothetical pr... 28 6.8
AL023844-13|CAE11312.1| 949|Caenorhabditis elegans Hypothetical... 28 6.8
AL023844-12|CAA19535.2| 947|Caenorhabditis elegans Hypothetical... 28 6.8
AF016452-4|AAB66015.1| 539|Caenorhabditis elegans Hypothetical ... 28 6.8
U20861-1|AAA62293.1| 302|Caenorhabditis elegans Hypothetical pr... 27 8.9
L00665-1|AAA28148.1| 537|Caenorhabditis elegans protein ( Caeno... 27 8.9
>Z35400-1|CAA84584.1| 532|Caenorhabditis elegans putative
transposase protein.
Length = 532
Score = 31.5 bits (68), Expect = 0.55
Identities = 30/141 (21%), Positives = 60/141 (42%), Gaps = 10/141 (7%)
Frame = -1
Query: 558 KKVNKIVSGERGQT--ITTVCCVSTTGNYVPPAFIFPRKKMKSELMDG--APTGSIGMTS 391
K+V ++V + T T + +S +G P ++ ++K G +P I +
Sbjct: 277 KRVERLVQSKDALTHSYTILPMLSASGKLAPMLYVVLQEKGGKFPKKGHFSPDNLIIRAN 336
Query: 390 DSEFINADLYLQWLHHFKDHISPTADNPVLLIID-----NHSNHISLHCRQHNMI-VLTL 229
S +N L + W+ P+ V+L++D + + N + V ++
Sbjct: 337 TSHIMNKQLMVDWVESAV--CDPSMPTEVVLLLDAWPAWKNEGDVQAAALSGNTVHVRSI 394
Query: 228 PPHSSHKLQPLDRGVYSPLKS 166
PP ++ +QP D + PLK+
Sbjct: 395 PPGATSFIQPCDLYFFCPLKN 415
>U12433-1|AAA20582.1| 532|Caenorhabditis elegans putative
transposase protein.
Length = 532
Score = 31.5 bits (68), Expect = 0.55
Identities = 30/141 (21%), Positives = 60/141 (42%), Gaps = 10/141 (7%)
Frame = -1
Query: 558 KKVNKIVSGERGQT--ITTVCCVSTTGNYVPPAFIFPRKKMKSELMDG--APTGSIGMTS 391
K+V ++V + T T + +S +G P ++ ++K G +P I +
Sbjct: 277 KRVERLVQSKDALTHSYTILPMLSASGKLAPMLYVVLQEKGGKFPKKGHFSPDNLIIRAN 336
Query: 390 DSEFINADLYLQWLHHFKDHISPTADNPVLLIID-----NHSNHISLHCRQHNMI-VLTL 229
S +N L + W+ P+ V+L++D + + N + V ++
Sbjct: 337 TSHIMNKQLMVDWVESAV--CDPSMPTEVVLLLDAWPAWKNEGDVQAAALSGNTVHVRSI 394
Query: 228 PPHSSHKLQPLDRGVYSPLKS 166
PP ++ +QP D + PLK+
Sbjct: 395 PPGATSFIQPCDLYFFCPLKN 415
>Z70680-2|CAA94573.1| 424|Caenorhabditis elegans Hypothetical
protein C25G4.4 protein.
Length = 424
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = -1
Query: 345 HFKDHISPTADNPVLLIIDNHSNHISLHCRQHNMIVLTLPPHSSHKLQPLDRGVYSPLK 169
HF D I +A N ++DN + + L +PP H++Q ++R Y K
Sbjct: 298 HFCDDIIVSAINLKQSVMDNPVTPTTANMLTRTAFALGIPPVVVHRVQSIERNAYQQRK 356
>U41263-5|AAC24427.1| 400|Caenorhabditis elegans Hypothetical
protein T19D12.7 protein.
Length = 400
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 60 VTYSGNIYKGSVENRYYL*IYQDAVSSIHQL 152
V G I EN Y+L I++D V++IH L
Sbjct: 262 VIEDGEILNAQPENNYFLKIFEDNVTAIHCL 292
>U97015-5|AAB52344.2| 362|Caenorhabditis elegans Hypothetical
protein F48C1.2 protein.
Length = 362
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -1
Query: 408 SIGMTSDSEFINADLYLQWLHHFKDHISPTADNPVLLIIDNHSNHISL 265
+IG ++ ++ Q+ HFK+ I +D +L+ DN HI L
Sbjct: 229 AIGTRFQLTSMSKEIITQFSSHFKNRIISASDVEILIRTDNPMKHILL 276
>Z82078-9|CAE11308.1| 949|Caenorhabditis elegans Hypothetical
protein Y48A6B.11b protein.
Length = 949
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +1
Query: 34 PVTLKAEATLPTVAIFIKALLKIDITYRSTRMLCLPFISFNCVLAFKRTV--NTPIQG 201
PVTL A + T+A F L I + S + PF ++F TV TP G
Sbjct: 494 PVTLSMTAPVSTIAEFDSMLNSISLHNESLETVAEPFSRLKTDISFPSTVEETTPRSG 551
>Z82078-8|CAB04948.2| 947|Caenorhabditis elegans Hypothetical
protein Y48A6B.11a protein.
Length = 947
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +1
Query: 34 PVTLKAEATLPTVAIFIKALLKIDITYRSTRMLCLPFISFNCVLAFKRTV--NTPIQG 201
PVTL A + T+A F L I + S + PF ++F TV TP G
Sbjct: 492 PVTLSMTAPVSTIAEFDSMLNSISLHNESLETVAEPFSRLKTDISFPSTVEETTPRSG 549
>Z81123-5|CAB76411.2| 393|Caenorhabditis elegans Hypothetical
protein T07D4.1 protein.
Length = 393
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Frame = -2
Query: 653 YNFPSGRIYNMDETGIVSVPKKTHKVISPK------GKKKLIKLFLENVV 522
+ +GRI + +++VPK+ KV PK G++K+++L + VV
Sbjct: 258 WQMKNGRIVVYKQESLLNVPKREKKVKEPKRPKDTEGRRKVVRLLVAVVV 307
>Z50071-9|CAA90404.3| 393|Caenorhabditis elegans Hypothetical
protein T07D4.1 protein.
Length = 393
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Frame = -2
Query: 653 YNFPSGRIYNMDETGIVSVPKKTHKVISPK------GKKKLIKLFLENVV 522
+ +GRI + +++VPK+ KV PK G++K+++L + VV
Sbjct: 258 WQMKNGRIVVYKQESLLNVPKREKKVKEPKRPKDTEGRRKVVRLLVAVVV 307
>AL023844-13|CAE11312.1| 949|Caenorhabditis elegans Hypothetical
protein Y48A6B.11b protein.
Length = 949
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +1
Query: 34 PVTLKAEATLPTVAIFIKALLKIDITYRSTRMLCLPFISFNCVLAFKRTV--NTPIQG 201
PVTL A + T+A F L I + S + PF ++F TV TP G
Sbjct: 494 PVTLSMTAPVSTIAEFDSMLNSISLHNESLETVAEPFSRLKTDISFPSTVEETTPRSG 551
>AL023844-12|CAA19535.2| 947|Caenorhabditis elegans Hypothetical
protein Y48A6B.11a protein.
Length = 947
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +1
Query: 34 PVTLKAEATLPTVAIFIKALLKIDITYRSTRMLCLPFISFNCVLAFKRTV--NTPIQG 201
PVTL A + T+A F L I + S + PF ++F TV TP G
Sbjct: 492 PVTLSMTAPVSTIAEFDSMLNSISLHNESLETVAEPFSRLKTDISFPSTVEETTPRSG 549
>AF016452-4|AAB66015.1| 539|Caenorhabditis elegans Hypothetical
protein T05H4.9 protein.
Length = 539
Score = 27.9 bits (59), Expect = 6.8
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Frame = -1
Query: 387 SEFINADLYLQWLHHFKDHISPTADNPVLLIIDN---HSNHISLH-CRQ--HNMIVLTLP 226
S + +L W+ H S +L+I+D+ +H ++ C +++ + +P
Sbjct: 339 SHIMGKELMCDWIKTCVAHAS--LPKRLLMIVDSWPSFKDHATIQQCFPPGYDVTIKNIP 396
Query: 225 PHSSHKLQPLDRGVYSPLKSQYAIEADEWKTQHPGRSISN 106
PH++ +QPLD P K+ HP I+N
Sbjct: 397 PHTTSMIQPLDSHWNGPWKNLIKKFTTHVLNFHPDFLIAN 436
>U20861-1|AAA62293.1| 302|Caenorhabditis elegans Hypothetical
protein C28H8.5a protein.
Length = 302
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = -1
Query: 381 FINADLYLQWLHHFKDHISPTADNPVLLIIDNHSNHISLHCRQHNM 244
F + D++LQ ++ F ++ + P++L+ ++S I+ CR +M
Sbjct: 40 FTHYDVHLQMINRFFPNVYYSVVIPIILLSTSYSAKIAPKCRDTDM 85
>L00665-1|AAA28148.1| 537|Caenorhabditis elegans protein (
Caenorhabditis eleganstransposable element Tc4, complete
cds. ).
Length = 537
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -1
Query: 288 NHSNHISLHCRQHNMIVLTLPPHSSHKLQPLDRGVYSPLKS 166
+H+ +L H++++ +P H++ +QPLD +P KS
Sbjct: 381 DHTTIKNLVPNGHDVVIRNIPEHTTGMIQPLDVYWNAPWKS 421
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,014,922
Number of Sequences: 27780
Number of extensions: 357980
Number of successful extensions: 1050
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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