Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5879
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p...   199   4e-52
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    26   6.4  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   8.5  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   8.5  

>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score =  199 bits (485), Expect = 4e-52
 Identities = 101/203 (49%), Positives = 146/203 (71%), Gaps = 2/203 (0%)
 Frame = +2

Query: 62  MSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGE 241
           M+ K R  +FP+R     +K RL GA  GH LLK+K++AL+ RFR I+  I + K  MG 
Sbjct: 1   MASKQRENVFPTRMTLTTMKTRLKGAQTGHSLLKRKSEALKKRFREIVVNIEQAKQKMGR 60

Query: 242 VMKEAAFSLAEAKFTTGD-FNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGS-DT 415
           VM+ AAFS+AE  F  G+  N  + Q+V + ++++RSK++N++GV LP FE   D S D 
Sbjct: 61  VMQIAAFSMAEVGFAMGNNINFEIQQSVKQPRLRVRSKQENISGVFLPTFEMNLDESIDD 120

Query: 416 YELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIP 595
           ++L GL +GGQQ+ K ++ ++ AV+ LV+LAS Q++FV L +V+++TNRRVN+IEH+IIP
Sbjct: 121 FQLTGLGKGGQQIQKARQVYEKAVETLVQLASYQSAFVLLGDVLQMTNRRVNSIEHIIIP 180

Query: 596 RLERTLAYIISELDELEREEFYR 664
           RLE T+ YI SEL+ELERE+F R
Sbjct: 181 RLENTIKYIESELEELEREDFTR 203


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 503 LASLQTSFVTLDEVIKITNRRVNAIEHVII 592
           + SL       D+V+KI  +R   ++H++I
Sbjct: 81  MTSLNLFVTKFDQVLKILEKRAPTVDHILI 110


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +2

Query: 416  YELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIP 595
            + L  L    Q   +LKK     ++L  EL   Q S   ++  +  TN  + A+E+++  
Sbjct: 811  FNLRPLLSSTQNDKQLKKRDAEIIELKYELKKQQNSKSEVERDLVETNNSLTAVENLL-- 868

Query: 596  RLERTLA 616
              ER +A
Sbjct: 869  TTERAIA 875


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +3

Query: 315  KMLPRLKSRLGPR---RTMLLVSPSQSLSHTRMVLIPMSWLV 431
            K +  L  RL PR   R M + SPS S + +  ++IP+S LV
Sbjct: 1222 KQMEALPERLRPRVKQRFMKIRSPSVSSATSVALMIPISTLV 1263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,715,941
Number of Sequences: 5004
Number of extensions: 53050
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)