Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5879
(737 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1340 + 32766773-32767582 210 1e-54
07_03_1198 + 24734985-24735169,24737897-24737975,24738070-247381... 34 0.14
07_03_0525 - 19044978-19045508 29 2.9
06_03_1309 + 29223197-29223240,29223358-29223592,29223695-292237... 29 2.9
07_02_0020 - 11897013-11897168,11897521-11897637,11898141-118981... 29 3.9
02_05_0862 - 32305562-32305654,32305935-32306033,32306178-323062... 29 3.9
02_05_0430 - 28923784-28923830,28923931-28924341,28924552-289249... 29 5.1
12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116... 28 6.7
06_02_0041 + 10889741-10890092,10890161-10890235,10891139-108923... 28 6.7
11_06_0573 + 25088921-25089035,25089752-25089843,25089990-25091672 28 8.9
07_03_0627 - 20061951-20062391,20062912-20062960,20063386-200638... 28 8.9
>04_04_1340 + 32766773-32767582
Length = 269
Score = 210 bits (512), Expect = 1e-54
Identities = 113/211 (53%), Positives = 148/211 (70%), Gaps = 10/211 (4%)
Frame = +2
Query: 62 MSGK-DRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMG 238
MSG+ RL + P+ ++K RL GA +GH LLKKK+DAL V+FR IL KI+ K MG
Sbjct: 1 MSGQTQRLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRAILKKIVAAKESMG 60
Query: 239 EVMKEAAFSLAEAKFTTGD-FNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQD---- 403
E M+ ++FSLAEAK+ GD VVLQ+V A +++RS ++NVAGV LP F + D
Sbjct: 61 EAMRASSFSLAEAKYVAGDGVRHVVLQSVRSASLRVRSHQENVAGVKLPKFTHFVDPAAG 120
Query: 404 ----GSDTYELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVN 571
+ + L GLARGGQQ+A + A+++LVELASLQTSF+TLDE IK TNRRVN
Sbjct: 121 SAGPSNASPSLTGLARGGQQVAACRAAHVKAIEVLVELASLQTSFLTLDEAIKTTNRRVN 180
Query: 572 AIEHVIIPRLERTLAYIISELDELEREEFYR 664
A+E+V+ PRLE T++YI ELDELERE+F+R
Sbjct: 181 ALENVVKPRLENTISYIKGELDELEREDFFR 211
>07_03_1198 +
24734985-24735169,24737897-24737975,24738070-24738134,
24738214-24738313,24738429-24738470,24739062-24739100,
24739140-24739330,24739745-24739850
Length = 268
Score = 33.9 bits (74), Expect = 0.14
Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Frame = +2
Query: 149 HGLLKKKADALQVRFRMILSKIIETKTL--MGEVMKEAAFSLAEAKFTTGDFNQVVLQNV 322
+G+LK K DALQ R +L + ++T T+ + ++ + +SL K NQ++ +++
Sbjct: 95 YGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSL---KHIRSKKNQLLFESI 151
Query: 323 TKAQIKIRSKKD 358
++ Q K +S K+
Sbjct: 152 SELQKKEKSLKN 163
>07_03_0525 - 19044978-19045508
Length = 176
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +2
Query: 128 LAGAVKGHGLLKKKADALQVRFRM--ILSKIIETKTLMG-EVMKEAAFSLA 271
LAGA G G +KK+A ++VR R+ I+S I T L +V+K + F +A
Sbjct: 110 LAGAGAGDGPVKKRAVRVRVRDRVGKIMSSISRTIHLTSRDVVKHSGFRVA 160
>06_03_1309 +
29223197-29223240,29223358-29223592,29223695-29223783,
29223870-29223968,29224065-29224158,29224297-29224514,
29224861-29224967,29225298-29225472,29225596-29225743,
29226548-29226596,29228016-29228162,29229990-29229996,
29230417-29230482,29230773-29231991,29232073-29233149,
29233226-29233355,29233519-29233617,29233817-29233878,
29234429-29234533
Length = 1389
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = -2
Query: 424 QLIGIRTILV*LKDWEGDTSNIVLLGPNLDLSLGNIL*HNLVEVSSCELSFSQRESSFFH 245
++IGIR + L DW GD S + +L L++ ++L+ V + E+ R SS +H
Sbjct: 404 EVIGIRNSIAILSDWPGDWSGLEKF-HDLPLNMQAFEIYHLIHV-TFEICTEMRISSPYH 461
Query: 244 Y 242
+
Sbjct: 462 F 462
>07_02_0020 -
11897013-11897168,11897521-11897637,11898141-11898197,
11898278-11898370,11898452-11898571,11898774-11898890,
11899254-11899349,11899445-11899594,11899932-11900086,
11901047-11901257
Length = 423
Score = 29.1 bits (62), Expect = 3.9
Identities = 35/122 (28%), Positives = 45/122 (36%), Gaps = 2/122 (1%)
Frame = +2
Query: 95 SRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKEAAFSLAE 274
SRG ++ L G L + D L V F +S I L +K + E
Sbjct: 69 SRGLSDELEQLLKGIAMMKELTLRTRDYL-VSFGECMSTRIFAALLNKLGVKARQYDAFE 127
Query: 275 AKF-TTGDFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESY-QDGSDTYELAGLARGGQ 448
F TT DF + T I R D V G +PI + G T + L RGG
Sbjct: 128 IGFITTDDFTNADILEATYPAIAKRLHGDWVTGPAIPIVTGFLGKGWKTGAITTLGRGGS 187
Query: 449 QL 454
L
Sbjct: 188 DL 189
>02_05_0862 -
32305562-32305654,32305935-32306033,32306178-32306259,
32307407-32307764,32308745-32309521,32309612-32309716,
32309803-32309911,32311016-32311024
Length = 543
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 580 ARNHSPAGTYTRVHHLRAGRA*A*GVLPSQEDPGQEEDYQGQGRSEKSRSPG 735
A + PA + RVH + G + G P E+ +EE+++G G + G
Sbjct: 11 ATDPDPAPSPLRVHGIGIGSHASRGTAPRGEEEEEEEEWRGDGDAGSEEEEG 62
>02_05_0430 -
28923784-28923830,28923931-28924341,28924552-28924963,
28925000-28925542,28925790-28925884,28926003-28927033,
28927304-28927452,28927483-28927523,28927594-28928206
Length = 1113
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 269 AEAKF-TTGDFNQVVLQNVTKAQIKIRSKKD 358
AE+KF G N ++QN+T+ ++ ++ KKD
Sbjct: 25 AESKFGEEGVTNDAIMQNLTQTELLVKEKKD 55
>12_01_0151 -
1158834-1159703,1159917-1160092,1160144-1162097,
1162360-1162620,1162729-1162916,1164127-1164166
Length = 1162
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +2
Query: 62 MSGKDRLAIFPSRGAQML--IKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLM 235
M K +LA+F + A + IK R A V+ G + +A+ + + +KII +L+
Sbjct: 95 MRTKPKLAMFQLKMANKIKTIKNRFAAIVEQRGDVNTILNAIPIDHNVHKNKIISEPSLL 154
Query: 236 GEV 244
G V
Sbjct: 155 GNV 157
>06_02_0041 +
10889741-10890092,10890161-10890235,10891139-10892341,
10892970-10893253,10893343-10893459,10894126-10894388,
10894557-10894725,10894838-10895110,10895674-10895718,
10896472-10896591,10896926-10896987,10897296-10897318,
10897911-10898128
Length = 1067
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +2
Query: 248 KEAAFSLAEAKFTTGDFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYE 421
K+A S + TTGD N +L+ ++ +D GVT+ E + +E
Sbjct: 205 KDAEASASAPPLTTGDGNSDILEETPSTSSELPDNQDYETGVTMSFDEQLKAFGSCHE 262
>11_06_0573 + 25088921-25089035,25089752-25089843,25089990-25091672
Length = 629
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 62 MSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQV 187
+ DRLAI P + + G L +V+G G+ +K +L V
Sbjct: 153 LGADDRLAIVPFHSSVVDATGLLEMSVEGRGVASRKVQSLAV 194
>07_03_0627 - 20061951-20062391,20062912-20062960,20063386-20063851,
20063933-20064139,20064267-20064405,20065146-20065282,
20065414-20065657,20065808-20065969,20066049-20066167,
20066240-20066314,20066327-20066500,20066607-20066769,
20067211-20067420,20067515-20067668,20067761-20067839,
20067999-20068146,20068501-20068671,20068771-20069385
Length = 1250
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 330 ALVTFCSTTWLKSPVVNLASAKEKAASFITSPI 232
+L TFCS ++ ++N AS KAA+ + +PI
Sbjct: 967 SLETFCSQNGIRLTLMNSASGFGKAATTLPTPI 999
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,008,354
Number of Sequences: 37544
Number of extensions: 363579
Number of successful extensions: 858
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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