Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5878
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   3.7  
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c...    25   3.7  
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc...    24   8.5  

>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 7/23 (30%), Positives = 19/23 (82%)
 Frame = -1

Query: 315 NSQLIIHALFLTIKFNNNTNNSY 247
           +++++++ LF+ +K++ +T NSY
Sbjct: 378 SNEMMMNLLFIHVKYSGDTENSY 400


>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 190 DGTNCFSYKMEHPVCETSLITV 255
           D      Y MEHP+C  + I V
Sbjct: 143 DSQTALEYLMEHPICSKTKIVV 164


>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 121 SPVYLKITCSYRESDSRVRPFGSD 192
           SPVYL++    R ++S V+P   D
Sbjct: 235 SPVYLELPSVRRNANSTVKPTSKD 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,425,487
Number of Sequences: 5004
Number of extensions: 22225
Number of successful extensions: 43
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)