Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5878
         (423 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66498-3|CAA91293.2|  687|Caenorhabditis elegans Hypothetical pr...    27   4.2  
U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    27   4.2  
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    27   4.2  
Z81146-3|CAB03524.1|  496|Caenorhabditis elegans Hypothetical pr...    27   5.5  

>Z66498-3|CAA91293.2|  687|Caenorhabditis elegans Hypothetical
           protein M195.3 protein.
          Length = 687

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 121 SPVYLKITCSYRESDSRVRPFGSDGTNCFSYKMEHPVCETSLITVISIIIKF 276
           SP+ L++T    +  + V   G  GTN   Y +E P+   +  TV   I K+
Sbjct: 426 SPLGLRVTDYEEQIGADVIEHGLAGTNVARYVLEKPLSTRTFQTVTKAITKW 477


>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 413 IGRIGYRAPPRVFFFFF 363
           IG  G+ APP VF FFF
Sbjct: 348 IGAFGHEAPPLVFKFFF 364


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 413 IGRIGYRAPPRVFFFFF 363
           IG  G+ APP VF FFF
Sbjct: 346 IGAFGHEAPPLVFKFFF 362


>Z81146-3|CAB03524.1|  496|Caenorhabditis elegans Hypothetical
          protein K10D11.5 protein.
          Length = 496

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 65 LEFNQTLPLLFPNCCNC 15
          L FN+T P LFPN  NC
Sbjct: 42 LNFNETEPPLFPNNFNC 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,029,637
Number of Sequences: 27780
Number of extensions: 125968
Number of successful extensions: 253
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)