Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5878
         (423 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   2.5  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   3.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   3.3  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   5.7  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   7.5  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    20   10.0 
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    20   10.0 

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -2

Query: 62  EFNQTLPLLFPNCC 21
           +F +   L+ PNCC
Sbjct: 354 KFREAFKLMLPNCC 367


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 345 CVSFSFHLFINSQLII 298
           C  F FHL  N  LII
Sbjct: 212 CRVFPFHLMFNRDLII 227


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 345 CVSFSFHLFINSQLII 298
           C  F FHL  N  LII
Sbjct: 212 CRVFPFHLMFNRDLII 227


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 303 IIHALFLTIKFNNNTNNSYE*RFTYRMLHFITKTIRPV 190
           II +L      NNN  N+Y  +  Y  +++I +   PV
Sbjct: 303 IISSLSNKTIHNNNNYNNYNNKKLYYNINYIEQIPVPV 340


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 273 FNNNTNNSYE*RFTYRMLHFITKTIRPV 190
           +NNN NN+Y  +  Y  +++I +   PV
Sbjct: 340 YNNNYNNNY--KKLYYNINYIEQIPVPV 365


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 273 FNNNTNNSYE 244
           +NNN NN+Y+
Sbjct: 105 YNNNYNNNYK 114


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 273 FNNNTNNSYE 244
           +NNN NN+Y+
Sbjct: 105 YNNNYNNNYK 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,573
Number of Sequences: 438
Number of extensions: 1848
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)