Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5876
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    29   1.1  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    26   7.5  

>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 421 ARRPFQFH*YVKLYDLHLRRESLMNFVT 338
           A RP  FH + + YDL++ R+SL    +
Sbjct: 24  ALRPVAFHVFTRKYDLNINRDSLQELAS 51


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 9   QLYSKIAEEHAQHPHPYETSVPRQSAAVAEATLKHSEL 122
           +L+ + A   A+HP  Y+T V   SA  AE+T  H  L
Sbjct: 176 RLFIQSAHNIAKHPSLYDTEVRNPSA--AESTNSHVSL 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,912,980
Number of Sequences: 5004
Number of extensions: 53737
Number of successful extensions: 90
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)