Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5876
         (824 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067216-6|AAC17522.1|  400|Caenorhabditis elegans Hypothetical ...    29   5.3  
AL032648-8|CAI46618.1|  365|Caenorhabditis elegans Hypothetical ...    28   9.3  

>AF067216-6|AAC17522.1|  400|Caenorhabditis elegans Hypothetical
           protein C35E7.6 protein.
          Length = 400

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 526 IHGNMVFATNHSLSE*LSENFQSETVFF 443
           IH N++FA NH L   L   F SET+ F
Sbjct: 67  IHKNIIFAYNHLLRMNLQYLFDSETLSF 94


>AL032648-8|CAI46618.1|  365|Caenorhabditis elegans Hypothetical
           protein Y54G9A.10 protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = +3

Query: 405 WKGLRATSNSSIIKKTVSLWKFSLNHSESE*LVAKTIFPWIILRRLSIHY*NLSVSVTRL 584
           W+ LR  SN+S+   T+  W         E +   T FP+     L +HY  +SVS   L
Sbjct: 93  WR-LRGLSNASLTNTTLKQWLTDDESEMIEVIDLSTDFPFFFSGYLKLHY-AISVSNIFL 150

Query: 585 V 587
           V
Sbjct: 151 V 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,593,033
Number of Sequences: 27780
Number of extensions: 285783
Number of successful extensions: 602
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)