Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5876
         (824 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    24   2.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.4  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.0  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 340 LRNSSMILFANVGHTISRTSETGKVSEPQVILQS 441
           L+NS ++    + H I+  S TGK +    I+QS
Sbjct: 159 LKNSKLLKQVKIPHDIAINSTTGKRNVVTPIVQS 192


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +3

Query: 45  HPHPYETSVPRQSAAVAEATL-KHSELFRVIAE 140
           HPHP ET  P+    +  A     +EL  ++ E
Sbjct: 466 HPHPPETPGPQVETILQNACFCARNELMMILKE 498


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 503 GKNHIPVDYFEKAFNTLLKSISIGYTFSKI 592
           G+ HI  DY   A   +    +I YT+  I
Sbjct: 141 GRGHIEDDYVGPAMELVYAWSTIDYTYDSI 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,550
Number of Sequences: 438
Number of extensions: 3908
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)