Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5875
(502 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 32 0.042
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 32 0.056
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 28 0.69
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 28 0.69
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 28 0.69
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 27 1.2
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 27 2.1
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 26 2.8
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc... 26 3.7
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 25 4.8
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 6.4
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ... 25 6.4
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c... 25 8.4
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 8.4
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 8.4
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 25 8.4
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 32.3 bits (70), Expect = 0.042
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Frame = +1
Query: 64 GPDSNLSPEDTVESINIITDHISSAIIRSSKEVDVEDSFHRIRL-----SPDLRNLLRVR 228
GP SN S + TDH++ I KE+D+ + + SP+ + + R
Sbjct: 29 GPPSNFKNNSLTSSTHSSTDHVNVLPISQDKEMDISSPVKKQKASYSNKSPNKAPIQKSR 88
Query: 229 NAAIRAYDRLPTHSNRIRMRRLQREVHSRLSD 324
++++++ L T S + ++R +R+ R D
Sbjct: 89 GSSLKSH--LETESQQTPVKRRRRKATIRNVD 118
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 31.9 bits (69), Expect = 0.056
Identities = 23/89 (25%), Positives = 42/89 (47%)
Frame = +1
Query: 172 DSFHRIRLSPDLRNLLRVRNAAIRAYDRLPTHSNRIRMRRLQREVHSRLSDARNDNWHSY 351
DS I+LS DLR + +R +A+ + +S +++R + E H+ RND H
Sbjct: 2205 DSISAIQLSKDLREIFHLRISALDILNSSTINSLIRKLKRRRTESHT-----RNDKIHES 2259
Query: 352 LEQLAPSHQAYWRLARTLKSETTATMPPL 438
++Q + + +TL + +P L
Sbjct: 2260 IDQFFKDIRKQILIPQTLCDKIEQILPCL 2288
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 28.3 bits (60), Expect = 0.69
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 226 RNAAIRAYDRLPTHSNR-IRMRRLQREVHSRLSDARNDNWHSYLEQ 360
+NAA+ D L THS R + RL R + ++ WH LE+
Sbjct: 1790 QNAALAIMDSLKTHSPRLVEQARLVSHELIRAAILWHEQWHEGLEE 1835
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 28.3 bits (60), Expect = 0.69
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 45 SANPPLRPGFESIPRGHRRIHKHHYRSHI 131
+AN L+ G E + HRR HK Y H+
Sbjct: 1669 NANTNLKYGLEDMSLSHRRGHKRTYDEHL 1697
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 28.3 bits (60), Expect = 0.69
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 45 SANPPLRPGFESIPRGHRRIHKHHYRSHI 131
+AN L+ G E + HRR HK Y H+
Sbjct: 1669 NANTNLKYGLEDMSLSHRRGHKRTYDEHL 1697
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 27.5 bits (58), Expect = 1.2
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +3
Query: 24 HVPSRHRSANPPLRPGFESIPRGHRRI---HKHHYR 122
H+P ++ + PL P + IP+G RR K HYR
Sbjct: 66 HLPLKNVYSQVPLLPVWSPIPKGPRRFLLPPKFHYR 101
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 26.6 bits (56), Expect = 2.1
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -3
Query: 221 LKRFLRSGDSLMRWKLSSTSTSLEDLMIAEDM*SVMMFMDSTVSSGDRFES 69
LKR G S WK +S T+ + + ED SV +++ S RF S
Sbjct: 12 LKRSNNRGKSKKDWKDASVETTPRETSVDEDNTSVFEDVEAQDSRQKRFSS 62
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 2.8
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +1
Query: 169 EDSFHRIRLSPDLRNLLRVRNAAIRAYDRLPTHSNRIRMRR-LQREVHSRLSDARNDNWH 345
ED++ R R S + R++ R+ + P S R LQ SR S AR+ W
Sbjct: 11 EDNYSRDRRSRFTEDSYSRRDSQ-RSGNEAPRESRYYRKEEHLQERSRSR-SPARDSRWK 68
Query: 346 SYLEQLAPSH 375
S AP+H
Sbjct: 69 SSSSGFAPAH 78
>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 3.7
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +1
Query: 76 NLSPEDTVESINIITDHISSAIIRSSKEVDVEDSFHRIRL 195
N+ E+ + I+++ H+S I S +D+ S R+R+
Sbjct: 103 NIKDEEELHYISLLNKHLSKGQILFSPTLDLTCSLQRLRV 142
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 4.8
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Frame = +1
Query: 142 IRSSKEVDVEDSFHRIRLSPD------LRNLLRVRNAAIRAYDRL--PTHSNRIRMRRLQ 297
I+ + +VEDS +++ LSP L N +VR + +A R P S I++ L+
Sbjct: 3 IKGGRRGNVEDSLNKLSLSPPDNNSSFLSNHFQVRKSYSQAPARTLKPFASEDIKILLLE 62
Query: 298 REVHSRLSDARNDNW 342
S LS+ +++ +
Sbjct: 63 NVNQSALSNLKDEGY 77
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 25.0 bits (52), Expect = 6.4
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +1
Query: 370 SHQAYWRLARTLKSETTATMPPLVRP 447
+HQ W + L + AT+P ++P
Sbjct: 1458 AHQILWNMKANLYKDEAATVPDSIKP 1483
>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 343
Score = 25.0 bits (52), Expect = 6.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 16 KLGTCLADTAPPILPYGPD 72
K+G C ADT PIL + D
Sbjct: 195 KIGACTADTMLPILEFEAD 213
>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 680
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 72 FESIPRGHRRIHKHHYRSHIF 134
F+ IPR R I+ H Y+S+++
Sbjct: 452 FQRIPRHLRSIYPHAYQSYVW 472
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -3
Query: 461 GGWPEGRTRGGIVAVVSDLRVLASRQYAW 375
G P+G GGIV+ + D Y+W
Sbjct: 651 GNLPDGEGEGGIVSNLEDTPAQLILSYSW 679
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +1
Query: 52 ILPYGPDSNLSPEDTVESINIITDHISSAIIRSSKEVDVEDSFH 183
+L Y + N +D + INI+ +S + S K + + FH
Sbjct: 777 VLKYTDEGNPDKQDIPKVINIVRGFLSRLNVESGKAENKFNLFH 820
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 73 SNLSPEDTVESINIITDHISSAIIRSSKEVD 165
S+LSP+ + I DH+S +I + K V+
Sbjct: 6 SSLSPKVSQPGHTEIVDHVSEKVITNGKNVN 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.132 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,128,741
Number of Sequences: 5004
Number of extensions: 42274
Number of successful extensions: 152
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -