Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5875
(502 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR457257-1|CAG33538.1| 423|Homo sapiens RNPC4 protein. 31 1.7
BC024208-1|AAH24208.1| 423|Homo sapiens RNA binding motif prote... 31 1.7
BC002566-1|AAH02566.1| 424|Homo sapiens RNA binding motif prote... 31 1.7
AK001344-1|BAA91638.1| 406|Homo sapiens protein ( Homo sapiens ... 31 1.7
AF087905-1|AAP97203.1| 425|Homo sapiens splicing factor SF2 pro... 31 1.7
BC071853-1|AAH71853.1| 356|Homo sapiens GREB1 protein protein. 29 6.9
AF245390-1|AAG39038.1| 409|Homo sapiens GREB1c protein. 29 6.9
AF245389-1|AAG39037.1| 457|Homo sapiens GREB1b protein. 29 6.9
AF245388-1|AAG39036.1| 1001|Homo sapiens GREB1a protein. 29 6.9
AC011994-1|AAX88907.1| 1949|Homo sapiens unknown protein. 29 6.9
BX537554-1|CAD97780.1| 383|Homo sapiens hypothetical protein pr... 29 9.1
BX537553-1|CAD97779.1| 383|Homo sapiens hypothetical protein pr... 29 9.1
>CR457257-1|CAG33538.1| 423|Homo sapiens RNPC4 protein.
Length = 423
Score = 31.5 bits (68), Expect = 1.7
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = +3
Query: 36 RHRSANPPLRPGFESIPRGHRRIHKHHYRS 125
RHRS + R G ES R HRR + HYRS
Sbjct: 83 RHRSRSWDRRHGSESRSRDHRREDRVHYRS 112
>BC024208-1|AAH24208.1| 423|Homo sapiens RNA binding motif protein
23 protein.
Length = 423
Score = 31.5 bits (68), Expect = 1.7
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = +3
Query: 36 RHRSANPPLRPGFESIPRGHRRIHKHHYRS 125
RHRS + R G ES R HRR + HYRS
Sbjct: 83 RHRSRSWDRRHGSESRSRDHRREDRVHYRS 112
>BC002566-1|AAH02566.1| 424|Homo sapiens RNA binding motif protein
23 protein.
Length = 424
Score = 31.5 bits (68), Expect = 1.7
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = +3
Query: 36 RHRSANPPLRPGFESIPRGHRRIHKHHYRS 125
RHRS + R G ES R HRR + HYRS
Sbjct: 83 RHRSRSWDRRHGSESRSRDHRREDRVHYRS 112
>AK001344-1|BAA91638.1| 406|Homo sapiens protein ( Homo sapiens
cDNA FLJ10482 fis, clone NT2RP2000153, weakly similar to
GAR2 PROTEIN. ).
Length = 406
Score = 31.5 bits (68), Expect = 1.7
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = +3
Query: 36 RHRSANPPLRPGFESIPRGHRRIHKHHYRS 125
RHRS + R G ES R HRR + HYRS
Sbjct: 83 RHRSRSWDRRHGSESRSRDHRREDRVHYRS 112
>AF087905-1|AAP97203.1| 425|Homo sapiens splicing factor SF2
protein.
Length = 425
Score = 31.5 bits (68), Expect = 1.7
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = +3
Query: 36 RHRSANPPLRPGFESIPRGHRRIHKHHYRS 125
RHRS + R G ES R HRR + HYRS
Sbjct: 83 RHRSRSWDRRHGSESRSRDHRREDRVHYRS 112
>BC071853-1|AAH71853.1| 356|Homo sapiens GREB1 protein protein.
Length = 356
Score = 29.5 bits (63), Expect = 6.9
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 173 TASTASDCPPILGIS*ELGTRQSGPTIVFPRIQTGFGCVVYNAKSTP 313
TA+ S+ P S +G +Q+GP P + G V+N K +P
Sbjct: 228 TAAFPSEPVPGTNPSILMGAQQAGPASDHPSLNAAMGPAVFNGKDSP 274
>AF245390-1|AAG39038.1| 409|Homo sapiens GREB1c protein.
Length = 409
Score = 29.5 bits (63), Expect = 6.9
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 173 TASTASDCPPILGIS*ELGTRQSGPTIVFPRIQTGFGCVVYNAKSTP 313
TA+ S+ P S +G +Q+GP P + G V+N K +P
Sbjct: 235 TAAFPSEPVPGTNPSILMGAQQAGPASDHPSLNAAMGPAVFNGKDSP 281
>AF245389-1|AAG39037.1| 457|Homo sapiens GREB1b protein.
Length = 457
Score = 29.5 bits (63), Expect = 6.9
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 173 TASTASDCPPILGIS*ELGTRQSGPTIVFPRIQTGFGCVVYNAKSTP 313
TA+ S+ P S +G +Q+GP P + G V+N K +P
Sbjct: 235 TAAFPSEPVPGTNPSILMGAQQAGPASDHPSLNAAMGPAVFNGKDSP 281
>AF245388-1|AAG39036.1| 1001|Homo sapiens GREB1a protein.
Length = 1001
Score = 29.5 bits (63), Expect = 6.9
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 173 TASTASDCPPILGIS*ELGTRQSGPTIVFPRIQTGFGCVVYNAKSTP 313
TA+ S+ P S +G +Q+GP P + G V+N K +P
Sbjct: 235 TAAFPSEPVPGTNPSILMGAQQAGPASDHPSLNAAMGPAVFNGKDSP 281
>AC011994-1|AAX88907.1| 1949|Homo sapiens unknown protein.
Length = 1949
Score = 29.5 bits (63), Expect = 6.9
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 173 TASTASDCPPILGIS*ELGTRQSGPTIVFPRIQTGFGCVVYNAKSTP 313
TA+ S+ P S +G +Q+GP P + G V+N K +P
Sbjct: 235 TAAFPSEPVPGTNPSILMGAQQAGPASDHPSLNAAMGPAVFNGKDSP 281
>BX537554-1|CAD97780.1| 383|Homo sapiens hypothetical protein
protein.
Length = 383
Score = 29.1 bits (62), Expect = 9.1
Identities = 24/80 (30%), Positives = 36/80 (45%)
Frame = +1
Query: 70 DSNLSPEDTVESINIITDHISSAIIRSSKEVDVEDSFHRIRLSPDLRNLLRVRNAAIRAY 249
DS S EDT + T S RS D+ D ++ +L+ L A ++
Sbjct: 158 DSVASDEDTDQEPLRSTGATRSNRARSMDSSDLSDGAVTLQEYLELKKALATSEAKVQQL 217
Query: 250 DRLPTHSNRIRMRRLQREVH 309
R+ + S +RRLQRE+H
Sbjct: 218 MRVNS-SLSDELRRLQREIH 236
>BX537553-1|CAD97779.1| 383|Homo sapiens hypothetical protein
protein.
Length = 383
Score = 29.1 bits (62), Expect = 9.1
Identities = 24/80 (30%), Positives = 36/80 (45%)
Frame = +1
Query: 70 DSNLSPEDTVESINIITDHISSAIIRSSKEVDVEDSFHRIRLSPDLRNLLRVRNAAIRAY 249
DS S EDT + T S RS D+ D ++ +L+ L A ++
Sbjct: 158 DSVASDEDTDQEPLRSTGATRSNRARSMDSSDLSDGAVTLQEYLELKKALATSEAKVQQL 217
Query: 250 DRLPTHSNRIRMRRLQREVH 309
R+ + S +RRLQRE+H
Sbjct: 218 MRVNS-SLSDELRRLQREIH 236
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.317 0.132 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,144,294
Number of Sequences: 237096
Number of extensions: 1643568
Number of successful extensions: 4887
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4887
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4593178062
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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