Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5873
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   2.7  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   3.5  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    27   3.5  
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    26   6.2  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    26   6.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.2  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   8.2  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   8.2  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        25   8.2  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    25   8.2  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 2/174 (1%)
 Frame = +3

Query: 36   QSEVRRIATQTEDYGRTE*E--KKGNDCKSFS*QDETVQXEEVMKLEKIKKELQVLDSQF 209
            ++ V+++    E+Y R   E     N   S S  D +    E++  E + +EL       
Sbjct: 1285 KAAVKKLENSNEEYKRHNQEILLSLNSSTSTS-SDASRLKNELVSKENLIEELNQEIGHL 1343

Query: 210  SQDVSVLRKKIDQACLSYADAEKQYLRVEKEFLNAKIQXXXXXXXXXXXXXXXCALITHN 389
              ++  ++ K +   L    A+ Q    + E  N K+                 +L  HN
Sbjct: 1344 KSELETVKSKSED--LENERAQNQSKIEQLELKNTKLAAAWRTKYEQVVNK---SLEKHN 1398

Query: 390  EMRKAQKLETLMLELANEKKNEINEALTLNDDNPVIIDGVDERTGKMVEINTNK 551
            ++R+    +T  LE    + +++NE L      P      +  T  + E N+ K
Sbjct: 1399 QIRQQLSQKTSELEAKVAECHQLNEQLNKPSATPTATTQSEPSTVSLEEFNSTK 1452


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +1

Query: 16  EHELASHKVKLGELQLKQKIMEEQNKKRKEMIAKALADR 132
           E     H+ +L  +   +K +EE N+K++E+  + L ++
Sbjct: 361 EERQRQHEERLKRINANKKALEELNQKKRELAQQQLKEQ 399


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +3

Query: 36  QSEVRRIATQTEDYGRTE*EKKGNDCKSFS*QDETVQXEEVMKLEKIKKELQVLDSQF 209
           QS++ ++    + Y + E  KK ND +      ET   EE +  EK+ K +++ +  F
Sbjct: 93  QSQLLKVKNSIDSY-KNEWSKKTNDAQILLNSYETFCEEEALIEEKL-KNIEIFEKNF 148


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +3

Query: 135 ETVQXEEVMKLEKIKKELQVLDSQFSQDVSVLRKKIDQACL---SYADAEKQYLRVEKEF 305
           ET+Q + V  ++       ++  +++ ++    +K+D  CL    Y D +K+     +E 
Sbjct: 112 ETLQKDRVSNVDDHLSSNPLMAEEYAPEIFEYIRKLDLKCLPNPKYMDQQKELTWKMREI 171

Query: 306 LN 311
           LN
Sbjct: 172 LN 173


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/57 (22%), Positives = 26/57 (45%)
 Frame = +3

Query: 153 EVMKLEKIKKELQVLDSQFSQDVSVLRKKIDQACLSYADAEKQYLRVEKEFLNAKIQ 323
           ++  LE      Q     F + ++ L  +ID+  L   +A K+Y  +   F N+ ++
Sbjct: 567 QIKSLESSLTNSQAECVSFQEKINELNSQIDELKLKLNEANKKYQELAISFENSNVK 623


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 129  QDETVQXEEVMKLEKIKKELQVLDSQFSQDVSVLRKKIDQA 251
            Q + V  +  M LEK++   Q+L S  + D  VLR K+  A
Sbjct: 1375 QGDDVVDKAKMILEKMEGHSQLLTSSANPDEEVLRAKLKAA 1415


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = +3

Query: 129  QDETVQXEEVMKLEKIKKELQVLDSQFSQDVSVLRKKIDQACLSYADAEKQYLRVEKEFL 308
            Q E V   +    + ++   Q+LDS+     S  R   D  CL+ A+++KQ + +E + L
Sbjct: 856  QAEIVGANKERIQKTVENGSQLLDSKSKAIHSNSRSMYDH-CLALAESQKQGVNLEVQTL 914

Query: 309  NAKIQ 323
            +  +Q
Sbjct: 915  DRLLQ 919


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +3

Query: 108  DCKSFS*QDETVQXEEVMKLEKIKKELQVLDSQFSQDVSVLRKKIDQACLSYAD 269
            D KS   + +    E+ +  +K++ ELQ      +++V +LRKK  +A L  AD
Sbjct: 1299 DTKSLGKELQNKINEKNLAEQKVE-ELQSQSFTKNKEVDLLRKKAQKAILKQAD 1351


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +3

Query: 372  ALITHNEMRKAQKLETLMLELANEKKNEINEAL 470
            +++   +    + LET +LE+  E KN++ E +
Sbjct: 1011 SVVLRGDKEIVEALETRLLEIVEELKNQVEEKI 1043


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +1

Query: 7   QYTEHELASHKVKLGELQLKQKIMEEQNKKRKEMIAKALADRTKQ 141
           + TE      K++  E +L+QK  EEQ ++++ M AK +A  T+Q
Sbjct: 39  EITEERNRQRKLQR-ERELRQKYEEEQ-RRQQAMEAKRIAASTRQ 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,142,008
Number of Sequences: 5004
Number of extensions: 33065
Number of successful extensions: 121
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)