Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5873
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0063 - 19372222-19372296,19373474-19373554,19373698-193738... 36 0.042
04_03_0841 - 20230920-20230994,20231084-20231164,20231410-202315... 31 0.69
03_05_0882 + 28467691-28467730,28468386-28468675,28469262-284694... 31 0.69
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561... 30 2.1
09_04_0694 - 19529084-19529201,19529464-19529544,19529637-195301... 29 3.7
08_02_0957 + 23033602-23034749,23035519-23035765,23036598-230367... 29 3.7
06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011... 29 3.7
04_01_0256 + 3402982-3402984,3403077-3403158,3403307-3403449,340... 29 3.7
07_03_0663 - 20451445-20452442,20452528-20452729 28 6.4
07_03_0660 - 20401933-20402933,20403074-20403269 28 8.5
>02_04_0063 -
19372222-19372296,19373474-19373554,19373698-19373808,
19373901-19374158
Length = 174
Score = 35.5 bits (78), Expect = 0.042
Identities = 23/91 (25%), Positives = 39/91 (42%)
Frame = +3
Query: 150 EEVMKLEKIKKELQVLDSQFSQDVSVLRKKIDQACLSYADAEKQYLRVEKEFLNAKIQXX 329
EE +L I++EL+V+ ++V +RK+ID+ K L+ EKE+
Sbjct: 76 EETKRLAFIRQELEVMSDPTRREVETIRKRIDKVNRQLKPLGKNCLKKEKEYKACLEAYN 135
Query: 330 XXXXXXXXXXXXXCALITHNEMRKAQKLETL 422
L+ +E + +KLE L
Sbjct: 136 EKSNEKATLVNRLMELVGESEQLRMKKLEEL 166
>04_03_0841 -
20230920-20230994,20231084-20231164,20231410-20231520,
20232050-20232268
Length = 161
Score = 31.5 bits (68), Expect = 0.69
Identities = 22/91 (24%), Positives = 39/91 (42%)
Frame = +3
Query: 150 EEVMKLEKIKKELQVLDSQFSQDVSVLRKKIDQACLSYADAEKQYLRVEKEFLNAKIQXX 329
EE +L I++EL+ + ++V V+RK+ID K ++ EKE+
Sbjct: 63 EESKRLAFIRQELEGMADPTRKEVEVIRKRIDVVNRQLKPLGKTCVKKEKEYKEILEAYN 122
Query: 330 XXXXXXXXXXXXXCALITHNEMRKAQKLETL 422
L++ +E + +KLE L
Sbjct: 123 EKNKEKALLVNRLIELVSESERMRMKKLEEL 153
>03_05_0882 +
28467691-28467730,28468386-28468675,28469262-28469411,
28470126-28470214,28470331-28470440,28470545-28470639,
28471110-28471162,28471374-28471539,28471909-28472001,
28472304-28472432,28472549-28472668,28472862-28472942,
28473495-28473602,28473895-28474038,28474120-28474218,
28474300-28474379,28474830-28474922,28475197-28475320
Length = 687
Score = 31.5 bits (68), Expect = 0.69
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = +1
Query: 16 EHELASHKVKLGELQLKQKIMEEQNKKRKEMIAKA 120
EHEL KVK+ E K ++EE KK E+ AKA
Sbjct: 398 EHELTQLKVKISE---KSNLLEEAEKKIAELTAKA 429
>12_02_1286 -
27555143-27555191,27555290-27555511,27555911-27556162,
27556683-27557062,27557202-27557311,27557864-27558033,
27558236-27558444,27558528-27558617,27559125-27559264,
27559356-27559463,27559626-27559716,27560736-27560852,
27561497-27561767,27561892-27562193,27562400-27562469,
27563464-27563702,27564613-27564846,27564943-27565179,
27565276-27565734
Length = 1249
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +3
Query: 150 EEVMKLEKIKKELQVLDSQFSQDVSVLRKKIDQ 248
EE+ +LE +K+EL+ + ++V VL KKI++
Sbjct: 775 EEIDRLEPVKEELETRIGKKEREVRVLEKKINE 807
>09_04_0694 -
19529084-19529201,19529464-19529544,19529637-19530136,
19530444-19530540,19530633-19530775,19531187-19531528,
19531810-19532031,19532292-19532330,19532386-19532601,
19533101-19533196,19533416-19533481,19533777-19533821,
19533903-19533965,19534274-19534344,19534599-19534699,
19534896-19534972,19535856-19535900
Length = 773
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 180 KELQVLDSQFSQDVSVLRKKIDQACLSYADAEKQYLRVEK 299
K LQ +D DV RK+ D+A L Y A ++YL ++K
Sbjct: 106 KLLQFVDIDL-HDVKDARKRFDKASLLYDQARERYLSLKK 144
>08_02_0957 +
23033602-23034749,23035519-23035765,23036598-23036744,
23036849-23037076
Length = 589
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 372 ALITHNEMRKAQKLETLMLELANEKKNEINEALTLNDDNPVIIDGVDERTGKMV 533
+++ H+E + +K ++ +EKKN I+ T D+ +D +D G V
Sbjct: 428 SILKHDESVELEKQSQRNAKILSEKKNHISVCQTKTDEMVARLDSLDVEIGNHV 481
>06_03_1490 +
30497980-30498102,30499034-30500156,30500914-30501132,
30501228-30501454,30501810-30501884,30502250-30502321,
30502765-30502863,30502975-30503046,30503131-30503245,
30503455-30503523,30503625-30503952,30504320-30504437,
30504522-30505448
Length = 1188
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3
Query: 138 TVQXEEVMKLEKIKKELQVLDSQFSQDVSVL-RKKIDQACLSYADAEKQYLRVEKEFLNA 314
++ ++ ++ EK K ++ VL+ + +S R +D +DA+K+ +EKE L++
Sbjct: 516 SLDADDAVRTEKQKPKIPVLEEHLTGQLSKEERSALDAKFKEASDADKKVQELEKEILDS 575
Query: 315 K 317
+
Sbjct: 576 R 576
>04_01_0256 +
3402982-3402984,3403077-3403158,3403307-3403449,
3403557-3403832,3404136-3404315
Length = 227
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/52 (32%), Positives = 32/52 (61%)
Frame = +3
Query: 165 LEKIKKELQVLDSQFSQDVSVLRKKIDQACLSYADAEKQYLRVEKEFLNAKI 320
LE++K++ + LD + + KK+ QA + A+ E++ L+ +KE LN K+
Sbjct: 90 LERMKRQKEDLDIKLREKRE--EKKVLQADKTAAEEEQKRLKRDKENLNLKV 139
>07_03_0663 - 20451445-20452442,20452528-20452729
Length = 399
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 210 SQDVSVLRKKIDQACLSYADAEKQYLRVEKEFLNA 314
S+ V+ + K+D C+S + +EK++ +E +NA
Sbjct: 54 SEHVAGFKDKLDALCVSASGSEKRFFHHTEEMINA 88
>07_03_0660 - 20401933-20402933,20403074-20403269
Length = 398
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/35 (28%), Positives = 23/35 (65%)
Frame = +3
Query: 210 SQDVSVLRKKIDQACLSYADAEKQYLRVEKEFLNA 314
S+ ++ ++ K+D C+S + +EK++ +E +NA
Sbjct: 52 SEHLAGIKDKLDTLCVSASGSEKRFFHHTEEMINA 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,948,340
Number of Sequences: 37544
Number of extensions: 164115
Number of successful extensions: 516
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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