Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5873
(716 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79694-8|CAB01965.1| 872|Caenorhabditis elegans Hypothetical pr... 32 0.36
Z72506-9|CAA96622.1| 872|Caenorhabditis elegans Hypothetical pr... 32 0.36
X08068-1|CAA30857.1| 882|Caenorhabditis elegans paramyosin prot... 32 0.36
Z81513-2|CAB04186.2| 489|Caenorhabditis elegans Hypothetical pr... 31 0.62
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr... 31 0.62
AF515833-1|AAM55225.1| 489|Caenorhabditis elegans synaptonemal ... 31 0.62
Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical pr... 30 1.4
U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily ass... 30 1.4
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr... 29 3.3
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch... 29 3.3
Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical p... 28 7.7
Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical p... 28 7.7
U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromos... 28 7.7
D38542-1|BAA07545.1| 256|Caenorhabditis elegans CeTMIII protein. 28 7.7
D38539-3|BAA07542.1| 256|Caenorhabditis elegans CeTMIII protein. 28 7.7
AL132877-5|CAD45604.1| 256|Caenorhabditis elegans Hypothetical ... 28 7.7
AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical ... 28 7.7
>Z79694-8|CAB01965.1| 872|Caenorhabditis elegans Hypothetical
protein F07A5.7 protein.
Length = 872
Score = 32.3 bits (70), Expect = 0.36
Identities = 25/101 (24%), Positives = 45/101 (44%)
Frame = +3
Query: 162 KLEKIKKELQVLDSQFSQDVSVLRKKIDQACLSYADAEKQYLRVEKEFLNAKIQXXXXXX 341
+L K++K L+ + ++VLRKK +CL Y D +Q L+ + ++ + Q
Sbjct: 97 ELSKLRKLLEESQLESEDAMNVLRKKHQDSCLDYQDQIEQ-LQKKNAKIDRERQRVQHEV 155
Query: 342 XXXXXXXXXCALITHNEMRKAQKLETLMLELANEKKNEINE 464
H + A++ E ELAN K ++N+
Sbjct: 156 IELTATIDQLQKDKHTAEKAAERFEAQANELAN-KVEDLNK 195
>Z72506-9|CAA96622.1| 872|Caenorhabditis elegans Hypothetical
protein F07A5.7 protein.
Length = 872
Score = 32.3 bits (70), Expect = 0.36
Identities = 25/101 (24%), Positives = 45/101 (44%)
Frame = +3
Query: 162 KLEKIKKELQVLDSQFSQDVSVLRKKIDQACLSYADAEKQYLRVEKEFLNAKIQXXXXXX 341
+L K++K L+ + ++VLRKK +CL Y D +Q L+ + ++ + Q
Sbjct: 97 ELSKLRKLLEESQLESEDAMNVLRKKHQDSCLDYQDQIEQ-LQKKNAKIDRERQRVQHEV 155
Query: 342 XXXXXXXXXCALITHNEMRKAQKLETLMLELANEKKNEINE 464
H + A++ E ELAN K ++N+
Sbjct: 156 IELTATIDQLQKDKHTAEKAAERFEAQANELAN-KVEDLNK 195
>X08068-1|CAA30857.1| 882|Caenorhabditis elegans paramyosin
protein.
Length = 882
Score = 32.3 bits (70), Expect = 0.36
Identities = 25/101 (24%), Positives = 45/101 (44%)
Frame = +3
Query: 162 KLEKIKKELQVLDSQFSQDVSVLRKKIDQACLSYADAEKQYLRVEKEFLNAKIQXXXXXX 341
+L K++K L+ + ++VLRKK +CL Y D +Q L+ + ++ + Q
Sbjct: 113 ELSKLRKLLEESQLESEDAMNVLRKKHQDSCLDYQDQIEQ-LQKKNAKIDRERQRVQHEV 171
Query: 342 XXXXXXXXXCALITHNEMRKAQKLETLMLELANEKKNEINE 464
H + A++ E ELAN K ++N+
Sbjct: 172 IELTATIDQLQKDKHTAEKAAERFEAQANELAN-KVEDLNK 211
>Z81513-2|CAB04186.2| 489|Caenorhabditis elegans Hypothetical
protein F26D2.2 protein.
Length = 489
Score = 31.5 bits (68), Expect = 0.62
Identities = 25/68 (36%), Positives = 35/68 (51%)
Frame = +3
Query: 99 KGNDCKSFS*QDETVQXEEVMKLEKIKKELQVLDSQFSQDVSVLRKKIDQACLSYADAEK 278
KG+D K + + + E+ KLEK KKEL+ L S S+ S L ++I L D +K
Sbjct: 325 KGSDRKKITSLKKAIAKEQE-KLEKGKKELEQLQS--SKTESDLEEEISAMQLEINDYDK 381
Query: 279 QYLRVEKE 302
Q KE
Sbjct: 382 QIKDAAKE 389
>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical
protein F35G12.8 protein.
Length = 1549
Score = 31.5 bits (68), Expect = 0.62
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +1
Query: 16 EHELASHKVKLGELQLKQKIMEEQNKKRKEMIAKALADRTKQ 141
E E A KV L+ KQKI+EE KKR E+ +A + +Q
Sbjct: 856 EKEAAKVKVDAKTLEDKQKIVEELEKKRDELGEEAAKVKARQ 897
>AF515833-1|AAM55225.1| 489|Caenorhabditis elegans synaptonemal
complex protein SYP-1 protein.
Length = 489
Score = 31.5 bits (68), Expect = 0.62
Identities = 25/68 (36%), Positives = 35/68 (51%)
Frame = +3
Query: 99 KGNDCKSFS*QDETVQXEEVMKLEKIKKELQVLDSQFSQDVSVLRKKIDQACLSYADAEK 278
KG+D K + + + E+ KLEK KKEL+ L S S+ S L ++I L D +K
Sbjct: 325 KGSDRKKITSLKKAIAKEQE-KLEKGKKELEQLQS--SKTESDLEEEISAMQLEINDYDK 381
Query: 279 QYLRVEKE 302
Q KE
Sbjct: 382 QIKDAAKE 389
>Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical
protein F17B5.1a protein.
Length = 777
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/58 (27%), Positives = 33/58 (56%)
Frame = +3
Query: 129 QDETVQXEEVMKLEKIKKELQVLDSQFSQDVSVLRKKIDQACLSYADAEKQYLRVEKE 302
Q+ + EE +KLEK +E+ + +S+ Q+ L+++ ++ + EKQ +E+E
Sbjct: 494 QNVRIDLEETLKLEKRIEEVSIEESKKKQEKLELKQREEEEARIKEEEEKQRKILEEE 551
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/38 (31%), Positives = 25/38 (65%)
Frame = +1
Query: 28 ASHKVKLGELQLKQKIMEEQNKKRKEMIAKALADRTKQ 141
A ++K+ E + ++K +EE+ KK++E+ K A+ K+
Sbjct: 565 AEEELKIYEEEKRKKELEEERKKKEELEIKRKAEEEKK 602
>U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily
assigned gene nameprotein 278 protein.
Length = 1130
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Frame = +3
Query: 114 KSFS*QDETVQXEEVMKLEKIK----KELQVLDSQFS--QDVSVLRKKIDQACLSYADAE 275
KSF + + E+ LEK++ KE+QVL+ +FS Q +++ +K I + + + E
Sbjct: 193 KSFQALQDKFEREKEQALEKLRKEHQKEIQVLEQRFSDTQLLNLEQKYIIE--IQRLEEE 250
Query: 276 KQYLRVEKEFL 308
++ LR EKE L
Sbjct: 251 RKSLRTEKERL 261
>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
K12F2.1 protein.
Length = 1969
Score = 29.1 bits (62), Expect = 3.3
Identities = 45/199 (22%), Positives = 83/199 (41%), Gaps = 7/199 (3%)
Frame = +3
Query: 36 QSEV-RRIATQTEDYGRTE*E-KKGNDCKSFS*QDETVQXEEVMKLEKIKKELQVLDSQF 209
+SE+ +RI + E++ T ++ + + + ET Q EE ++ IKK+L+
Sbjct: 1582 RSEIEKRIQEKEEEFENTRRNHQRALESMQATLEAETKQKEEALR---IKKKLE------ 1632
Query: 210 SQDVSVLRKKIDQACLSYADAEKQYLRVEKEFLNAKIQXXXXXXXXXXXXXXXCALITHN 389
D++ L +D A +YADA+K + + + Q A N
Sbjct: 1633 -SDINDLEIALDHANRAYADAQKTIKKYMETVQELQFQIEEEQRQKDEIREQFLASEKRN 1691
Query: 390 EMRKAQKLETLMLELANE--KKNEINEALTLNDDNPVIIDGVDERTGKMVEINTN-KS*H 560
+ +++K E A E ++N E + L + N + V TG+ ++ + H
Sbjct: 1692 AILQSEKDELAQQAEAAERARRNAEAECIELREQNNDLNAHVSALTGQRRKLEGELLAAH 1751
Query: 561 N--YEINNSLPNIISLGNR 611
EI N L N + G +
Sbjct: 1752 AELEEIANELKNAVEQGQK 1770
>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
protein.
Length = 1969
Score = 29.1 bits (62), Expect = 3.3
Identities = 45/199 (22%), Positives = 83/199 (41%), Gaps = 7/199 (3%)
Frame = +3
Query: 36 QSEV-RRIATQTEDYGRTE*E-KKGNDCKSFS*QDETVQXEEVMKLEKIKKELQVLDSQF 209
+SE+ +RI + E++ T ++ + + + ET Q EE ++ IKK+L+
Sbjct: 1582 RSEIEKRIQEKEEEFENTRRNHQRALESMQATLEAETKQKEEALR---IKKKLE------ 1632
Query: 210 SQDVSVLRKKIDQACLSYADAEKQYLRVEKEFLNAKIQXXXXXXXXXXXXXXXCALITHN 389
D++ L +D A +YADA+K + + + Q A N
Sbjct: 1633 -SDINDLEIALDHANRAYADAQKTIKKYMETVQELQFQIEEEQRQKDEIREQFLASEKRN 1691
Query: 390 EMRKAQKLETLMLELANE--KKNEINEALTLNDDNPVIIDGVDERTGKMVEINTN-KS*H 560
+ +++K E A E ++N E + L + N + V TG+ ++ + H
Sbjct: 1692 AILQSEKDELAQQAEAAERARRNAEAECIELREQNNDLNAHVSALTGQRRKLEGELLAAH 1751
Query: 561 N--YEINNSLPNIISLGNR 611
EI N L N + G +
Sbjct: 1752 AELEEIANELKNAVEQGQK 1770
>Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical
protein M106.1 protein.
Length = 1244
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 129 QDETVQXEEVMKLEKIKKELQVLDSQFSQDVSVLRKK 239
Q ETV+ + V + K+KKE + ++ S+D VL K
Sbjct: 311 QKETVKNQLVETINKLKKEGEQINKSLSKDREVLDAK 347
>Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical
protein M106.1 protein.
Length = 1244
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 129 QDETVQXEEVMKLEKIKKELQVLDSQFSQDVSVLRKK 239
Q ETV+ + V + K+KKE + ++ S+D VL K
Sbjct: 311 QKETVKNQLVETINKLKKEGEQINKSLSKDREVLDAK 347
>U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromosome
and X-chromosomeassociated MIX-1 protein protein.
Length = 1244
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 129 QDETVQXEEVMKLEKIKKELQVLDSQFSQDVSVLRKK 239
Q ETV+ + V + K+KKE + ++ S+D VL K
Sbjct: 311 QKETVKNQLVETINKLKKEGEQINKSLSKDREVLDAK 347
>D38542-1|BAA07545.1| 256|Caenorhabditis elegans CeTMIII protein.
Length = 256
Score = 27.9 bits (59), Expect = 7.7
Identities = 21/85 (24%), Positives = 39/85 (45%)
Frame = +3
Query: 48 RRIATQTEDYGRTE*EKKGNDCKSFS*QDETVQXEEVMKLEKIKKELQVLDSQFSQDVSV 227
RRI ED RTE K K + T +E ++ +K ++ Q + +
Sbjct: 62 RRIVLVEEDLERTEDRLKTATSKL---EQATKAADEA---DRARKSMETRSQQDEERANF 115
Query: 228 LRKKIDQACLSYADAEKQYLRVEKE 302
L ++D+A + DA+++Y V ++
Sbjct: 116 LETQVDEAKVIAEDADRKYEEVARK 140
>D38539-3|BAA07542.1| 256|Caenorhabditis elegans CeTMIII protein.
Length = 256
Score = 27.9 bits (59), Expect = 7.7
Identities = 21/85 (24%), Positives = 39/85 (45%)
Frame = +3
Query: 48 RRIATQTEDYGRTE*EKKGNDCKSFS*QDETVQXEEVMKLEKIKKELQVLDSQFSQDVSV 227
RRI ED RTE K K + T +E ++ +K ++ Q + +
Sbjct: 62 RRIVLVEEDLERTEDRLKTATSKL---EQATKAADEA---DRARKSMETRSQQDEERANF 115
Query: 228 LRKKIDQACLSYADAEKQYLRVEKE 302
L ++D+A + DA+++Y V ++
Sbjct: 116 LETQVDEAKVIAEDADRKYEEVARK 140
>AL132877-5|CAD45604.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1e protein.
Length = 256
Score = 27.9 bits (59), Expect = 7.7
Identities = 21/85 (24%), Positives = 39/85 (45%)
Frame = +3
Query: 48 RRIATQTEDYGRTE*EKKGNDCKSFS*QDETVQXEEVMKLEKIKKELQVLDSQFSQDVSV 227
RRI ED RTE K K + T +E ++ +K ++ Q + +
Sbjct: 62 RRIVLVEEDLERTEDRLKTATSKL---EQATKAADEA---DRARKSMETRSQQDEERANF 115
Query: 228 LRKKIDQACLSYADAEKQYLRVEKE 302
L ++D+A + DA+++Y V ++
Sbjct: 116 LETQVDEAKVIAEDADRKYEEVARK 140
>AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical
protein M106.1 protein.
Length = 1244
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 129 QDETVQXEEVMKLEKIKKELQVLDSQFSQDVSVLRKK 239
Q ETV+ + V + K+KKE + ++ S+D VL K
Sbjct: 311 QKETVKNQLVETINKLKKEGEQINKSLSKDREVLDAK 347
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,578,114
Number of Sequences: 27780
Number of extensions: 179898
Number of successful extensions: 716
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -