Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5873
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.7  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   8.8  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 375 LITHNEMRKAQKLETLMLELANEKKNEINEALTLNDDNPVIID 503
           +I +N +   ++   L+ EL NE+ + I   LT+N +    I+
Sbjct: 492 IIKNNSVGGKKEWTGLIGELVNERADMIVAPLTINPERAEFIE 534


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +2

Query: 371 RLNNTQRNE 397
           R+NNTQRNE
Sbjct: 366 RVNNTQRNE 374


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +3

Query: 540 NTNKS*HNYEINNSLPNIISLGNREIKNLKIKN 638
           N N   +NY  NN+  N  +  N   K L+  N
Sbjct: 84  NNNSLSNNYNYNNNYNNYNNNYNTNYKKLQYYN 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,170
Number of Sequences: 438
Number of extensions: 2456
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)