Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5872
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    25   5.7  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   5.7  
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...    25   7.5  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    25   7.5  

>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +3

Query: 93  IKSAFKVKVECQCGQKYYWDRNTTDRIAQKEGKNYSLIYISLVH--CTTPV 239
           I   +   ++   G+ YY+     DR +   GK+   I I L+   C+T V
Sbjct: 201 ISCTYPESIQTDMGRVYYFLETLVDRSSTFSGKSTGRIPIELIRSPCSTSV 251


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 216 LVHCTTPVYFVFKMTCDFWLI 278
           +V  T  +Y+VF +T  FW+I
Sbjct: 305 IVQYTPHMYYVFYITSTFWII 325


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 55  IEIRSFKYFI*CSLRVHSKLKLSVNVDRNTTGIEILQ 165
           + IRSFK  +  +L +  ++ L VNVD N     +++
Sbjct: 119 VMIRSFKQALEDALSIIDEITLPVNVDDNAEMFRLIR 155


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +3

Query: 216 LVHCTTP-VYFVFKMTCDFWL 275
           LV+CT    YF+F   C+F++
Sbjct: 312 LVYCTEEQAYFLFSQLCEFYI 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,813,496
Number of Sequences: 5004
Number of extensions: 35075
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)