Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5870
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    31   0.21 
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    25   7.9  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   7.9  

>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 336 PSKQKKKPTIEFFGILSNDFYFQPSMLWTPLKTTRSH 446
           PSK  KKP  E   +LS  F  +PS + TP+K    H
Sbjct: 90  PSKSTKKPHNETEPLLSPQFIDKPSNIETPVKIESPH 126


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -2

Query: 154 VPTRADSQEVLPPVYSRSCRPNGKQSTS 71
           VPTR++S  +L P Y+ +   + +++T+
Sbjct: 470 VPTRSNSSSILQPSYNLNSHSSDRRNTN 497


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 558 PEHFIFLTKDFKVDLKKKEQYRQAKACLD 644
           PE   F++  F   L+  E Y Q +AC +
Sbjct: 667 PESITFISSKFVDHLQSNENYIQTEACFE 695


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,962,304
Number of Sequences: 5004
Number of extensions: 62230
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)