Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5870
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039048-13|AAB94231.1|  440|Caenorhabditis elegans Hypothetical...    29   3.2  
Z50858-3|CAA90723.1|  131|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z72502-9|CAE17688.1|  300|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AF039048-13|AAB94231.1|  440|Caenorhabditis elegans Hypothetical
           protein F16B4.11 protein.
          Length = 440

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -2

Query: 634 AFACRYCSFFFKSTLKSLVKNIKC 563
           AF CR CS FF+    SLV   KC
Sbjct: 45  AFTCRACSAFFRRAHFSLVTERKC 68


>Z50858-3|CAA90723.1|  131|Caenorhabditis elegans Hypothetical
           protein F44A6.3 protein.
          Length = 131

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 181 FTVEIGGVAVPTRADSQEVLPPVYSRS 101
           F V   G  +P+++ S E++PPV+S S
Sbjct: 12  FRVTFNGSLLPSQSQSGEIIPPVFSDS 38


>Z72502-9|CAE17688.1|  300|Caenorhabditis elegans Hypothetical
           protein C08B6.12 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +2

Query: 548 ALISRTF-YIFN*RF*SRLEKKRTISTGESLFGL--SDIFANLPENRL 682
           A++   F YIFN      LEKKR I +   +F +  S+IF N  +N L
Sbjct: 9   AILMHIFAYIFNAILLVMLEKKRVIHSRVYMFNMIVSEIFMNFTQNIL 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,623,072
Number of Sequences: 27780
Number of extensions: 358661
Number of successful extensions: 940
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)