Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5868
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    29   0.58 
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    29   1.0  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    26   5.4  

>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 24/78 (30%), Positives = 41/78 (52%)
 Frame = +1

Query: 91  QYVFQISNFYLFNKKNASLYLLTLNHSHTMPQLRSYHT*GIVSIFYKKKNLNARIYRALG 270
           Q +F+I+ FY+      SL++++L  S   P+L SYH           K+ N +   ++ 
Sbjct: 309 QTLFRIAIFYIL-----SLFIVSLLISGADPRLTSYHGVDASPFVLAIKDANIKALPSIL 363

Query: 271 NALTMLLILVLSSKALKL 324
           NA+  +LI V+SS   +L
Sbjct: 364 NAI--ILISVISSANAQL 379


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 18  NNFFGLVFYCSL*FHHYG 71
           NNF   +F+ +L FHHYG
Sbjct: 448 NNFISDIFFLNLAFHHYG 465


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +1

Query: 103 QISNFYLFNKKNASLYLLTLNHSHTMPQLRSYHT*GIVSIFYKKKNL 243
           +I N Y F++  +S  + TL  ++  P++R+  T G V    K+K++
Sbjct: 432 KIENEYTFDESISSSIVCTLRAAYDPPKVRTRSTLGKVFSTNKRKSM 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,042,256
Number of Sequences: 5004
Number of extensions: 58578
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)