Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5868
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    33   0.004
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    29   0.050
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    27   0.27 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    26   0.35 
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    24   1.9  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    24   1.9  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    24   1.9  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    24   1.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.9  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    24   1.9  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.5  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 32.7 bits (71), Expect = 0.004
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = +3

Query: 357 WCGGVISQILSVLLSMASLLNLCVFSLD 440
           WC   + + L VL S AS+LNLCV SLD
Sbjct: 118 WCD--VWRSLDVLFSTASILNLCVISLD 143


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 29.1 bits (62), Expect = 0.050
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 354 LWCGGVISQILSVLLSMASLLNLCVFSLD*LLTV 455
           LWC   I   + V +  AS+LNLC  SLD  L V
Sbjct: 136 LWCS--IWLAVDVWMCTASILNLCAISLDRYLAV 167


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 26.6 bits (56), Expect = 0.27
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 384 LSVLLSMASLLNLCVFSLD*LLTV 455
           L +LL  AS+L+LC  S+D  L V
Sbjct: 117 LDILLCTASILSLCAISIDRYLAV 140


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 390 VLLSMASLLNLCVFSLD 440
           V+ S AS+LNLC  SLD
Sbjct: 106 VMCSTASILNLCAISLD 122


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 390 VLLSMASLLNLCVFSLD 440
           VL   AS+LNLC  +LD
Sbjct: 117 VLCCTASILNLCAIALD 133


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 390 VLLSMASLLNLCVFSLD 440
           VL   AS+LNLC  +LD
Sbjct: 117 VLCCTASILNLCAIALD 133


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 463 SNITVNNQSREKTHKFNNDAIDNNTLN 383
           SN T++N +    + +NN   +NN  N
Sbjct: 86  SNKTIHNNNNYNNNNYNNYNYNNNNYN 112


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 108 NLKYVLSRFTVDFHSGGITNYNKKQAQKNY 19
           N KY       ++++    NYNKK   KNY
Sbjct: 321 NYKYSNYNNYNNYNNNNYNNYNKKLYYKNY 350


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 390 VLLSMASLLNLCVFSLD 440
           VL   AS+LNLC+ S+D
Sbjct: 122 VLSCTASILNLCMISVD 138


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 390 VLLSMASLLNLCVFSLD 440
           VL   AS+LNLC  +LD
Sbjct: 117 VLCCTASILNLCAIALD 133


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 463 SNITVNNQSREKTHKFNNDAIDNNTLN 383
           SN T++N +  K + +NN+  +NN  N
Sbjct: 319 SNKTIHNNNNYK-YNYNNNNYNNNNYN 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,946
Number of Sequences: 438
Number of extensions: 4136
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)