Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5867
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    29   0.51 
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...    29   0.51 
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        29   0.51 
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot...    28   1.5  
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.7  
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha...    26   6.2  
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce...    26   6.2  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   6.2  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 9   DRVWHRALLSKLPSYGIPEGLCKWIASFLDG 101
           D V   A  S+LP YGI  GL  W A++  G
Sbjct: 72  DYVLAHAHSSELPRYGIKWGLANWTAAYATG 102


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 9   DRVWHRALLSKLPSYGIPEGLCKWIASFLDG 101
           D V   A  S+LP YGI  GL  W A++  G
Sbjct: 72  DYVLAHAHSSELPRYGIKWGLANWTAAYATG 102


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +2

Query: 539 ESSGRQSQVGVQNAGSPQQSEAVLHAWTKAFAL*STSPASRGSTAPISGPGLPNT 703
           ++ G  +Q+ ++N G    S A  HA+         + A+       SGP LPNT
Sbjct: 52  QTDGNSNQIPMENVGHISLSSANSHAYAPPSGPPPNTGANSYGNPNYSGPQLPNT 106


>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
           1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 312 PAPRSERDS-DGRYIAHPPCCHPHSNACHQLTACH 211
           P P++E+++  GR ++H P    H  A   L ACH
Sbjct: 171 PMPKNEQETWGGRCLSHHPTICSHILAASILRACH 205


>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 369 IWRLAPESSPLQTQVLIVSPAPRSERDSDGRYI 271
           +W L PESS L  ++L+  P       S G+ I
Sbjct: 273 LWNLCPESSILTKEILLELPKASDVAKSIGKMI 305


>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
           Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -2

Query: 585 LPAFWTPTWLCLPDDSETGHRSKCRP 508
           LPA W  TW  L D S  G     RP
Sbjct: 353 LPAEWKATWTNLNDQSNEGIAHVSRP 378


>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 445

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 418 ARSLRRRTPLSWRRNSKEYPCNLPRVLGYLGSTFR 522
           A +L R    SW  NS+E+P +L    G +G   +
Sbjct: 124 ADNLTRPHWTSWTENSEEFPSSLVMSTGVIGQRLK 158


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 357 APESSPLQTQVLIVSPAPRSERDSDGRYIAHPPCCHPHS 241
           AP SS  Q QV +     RS ++S     + PP  HP S
Sbjct: 38  APSSSSSQNQVELDEQFARSLQNSQSSSYSLPPFDHPPS 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,397,881
Number of Sequences: 5004
Number of extensions: 75797
Number of successful extensions: 216
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)