Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5867
(721 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 41 9e-04
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 41 0.001
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 40 0.003
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 33 0.30
04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095 31 0.92
11_04_0307 + 16185405-16185713,16185847-16185942,16186626-161867... 31 1.2
01_01_0753 - 5814087-5814344,5814461-5814646,5814847-5815004,581... 29 2.8
12_01_0702 - 6006553-6007350,6010743-6011270 29 4.9
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 29 4.9
04_01_0612 + 8036625-8036751,8036917-8037110,8037463-8038230 29 4.9
10_08_0350 + 17066058-17066235,17067084-17067223 28 6.5
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665... 28 6.5
02_03_0188 + 16173801-16173910,16174045-16174402 28 6.5
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 41.1 bits (92), Expect = 9e-04
Identities = 26/73 (35%), Positives = 36/73 (49%)
Frame = +3
Query: 3 AFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVLQGPVL 182
AFD V ++L L G P+ WI + L V++ G +T G+ QG L
Sbjct: 46 AFDSVNWQSLFQILSVKGFPDNWISWIKNLLQTSKSAVLLHGIPGKWITCKKGLRQGDPL 105
Query: 183 SPTLFILYINDML 221
SP LFIL + D+L
Sbjct: 106 SPYLFIL-VADVL 117
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = +3
Query: 3 AFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVLQGPVL 182
AFD + H A+LS + G P +W+ S V+++G ++ GV QG L
Sbjct: 461 AFDTIEHSAILSVMQHMGFPLKWIEWVQMVFSTASSAVLLNGVPGNSFKCRRGVRQGVPL 520
Query: 183 SPTLFIL 203
S LF+L
Sbjct: 521 SLLLFVL 527
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 39.5 bits (88), Expect = 0.003
Identities = 26/73 (35%), Positives = 34/73 (46%)
Frame = +3
Query: 3 AFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVLQGPVL 182
AFD V +L L G PE WI L V+++G + G+LQG L
Sbjct: 1061 AFDSVIWSSLFKILAVRGFPENWISWIKGLLSSSKSAVLLNGVPGRWICCKKGLLQGDPL 1120
Query: 183 SPTLFILYINDML 221
S LFIL + D+L
Sbjct: 1121 SSYLFIL-VADVL 1132
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 32.7 bits (71), Expect = 0.30
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +3
Query: 3 AFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVLQGPVL 182
A+DR+ L L G + + + + ++G+ +DT+ + G+ QG +
Sbjct: 262 AYDRIEWSYLHGCLMRLGFEQDWINTVMRCVTSTRYAIRINGELTDTVVPSRGIRQGDPI 321
Query: 183 SPTLFIL 203
SP LF+L
Sbjct: 322 SPYLFLL 328
>04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095
Length = 597
Score = 31.1 bits (67), Expect = 0.92
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +2
Query: 527 CPVSESSGRQSQVGVQNAGSPQQSEAVLHAWTKAFAL*STSPASRGST 670
C E++ +Q + A PQQ++ V T A A + SPA RG+T
Sbjct: 94 CAEGEAAAQQPTLAPPPAQQPQQNQGVGFGGTGAGAATTVSPAPRGTT 141
>11_04_0307 +
16185405-16185713,16185847-16185942,16186626-16186730,
16186938-16187090,16188395-16188478,16188566-16188694,
16188986-16189165,16189555-16189677,16189678-16189794,
16189889-16190053
Length = 486
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 583 ESSTERSGTSRLDKGFCFIKHKSGLAWEYCSHL 681
+ T S ++ D FCF++ SG YC HL
Sbjct: 286 DPDTSNSASAEADTFFCFVELLSGFKDNYCKHL 318
>01_01_0753 -
5814087-5814344,5814461-5814646,5814847-5815004,
5815082-5815214,5815299-5815489,5815826-5816281,
5816543-5816661,5816729-5816872,5816994-5817065,
5817368-5817500,5817598-5817733
Length = 661
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 39 KLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSD 140
KLP + +C W A +L G+S + +VD +
Sbjct: 563 KLPEADDQKSMCNWAAEYLKGKSYSKLVDASLKE 596
>12_01_0702 - 6006553-6007350,6010743-6011270
Length = 441
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/66 (30%), Positives = 28/66 (42%)
Frame = -2
Query: 696 GSPGPEMGAVLPREAGLVLYKAKAFVQA*STASLC*GLPAFWTPTWLCLPDDSETGHRSK 517
G+ G G +PR L+ + FVQ T S G P + +P D H K
Sbjct: 167 GAAGRRTGKAMPRYKPEYLFGVEGFVQELRTMSFAIGFGT--APFYAQIPHDR---HEEK 221
Query: 516 CRPQVS 499
CR +V+
Sbjct: 222 CRVKVT 227
>08_02_0104 + 12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/79 (21%), Positives = 33/79 (41%)
Frame = +3
Query: 9 DRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVLQGPVLSP 188
D +H + + G+ + L W A +G + +V D +CS T I+ V + P
Sbjct: 902 DLDYHTQIEYRWGGEGLRKTLICWAAEKSEGGQVVLVEDEECSSTYCISFRVKNAEAVPP 961
Query: 189 TLFILYINDMLSIDGMHCY 245
+ + + I + C+
Sbjct: 962 ---VKELRKTMRIQALRCH 977
>04_01_0612 + 8036625-8036751,8036917-8037110,8037463-8038230
Length = 362
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -2
Query: 135 SNRRLQRP*CSAHPKS*RSTCRDPRGFRKMVASTEVPYARPCRRP 1
+++R+++ +A P S C DP+ ++ V Y+ CR P
Sbjct: 18 TDQRVKKKRAAASPNSEDGYCADPKKLNALIEDIFVCYSLSCREP 62
>10_08_0350 + 17066058-17066235,17067084-17067223
Length = 105
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 497 WDTWGRHFERCPVSESSGRQSQVGVQNAGSPQQSEAV 607
W F R P ++ R ++VGV +G QQ AV
Sbjct: 66 WFVLAGEFRRAPQADGGRRWNRVGVSASGDMQQKPAV 102
>07_01_1203 -
11464142-11464324,11464422-11464484,11464685-11466515,
11467240-11468036
Length = 957
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 172 VRCSPPRFSSCISMTCCQLMACIAMRMTARGMRDISAI-RVS 294
VR + PR S ++ TC ++ + +R+ A M+D+ A+ R+S
Sbjct: 747 VRVTLPRLPSWVNSTCVPHLSHLDLRVKAMEMQDLEALARIS 788
>02_03_0188 + 16173801-16173910,16174045-16174402
Length = 155
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 449 HGAAIPRSIPATFREYWDT-WGRHFERCPVSESSGRQSQVGVQNAGSPQQSE 601
HG + R PA R++W W RH E PV+ Q G GS Q+S+
Sbjct: 58 HGWRLRR--PARHRQWWRRGWLRHEEAWPVAAVVVPQECRGAIGKGSDQRSD 107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,082,548
Number of Sequences: 37544
Number of extensions: 578660
Number of successful extensions: 1866
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1866
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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