Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5864
(554 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy... 225 3e-60
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac... 225 3e-60
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 49 5e-07
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 26 3.2
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 26 4.3
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 26 4.3
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 25 5.7
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 5.7
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr... 25 5.7
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 25 7.5
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S... 25 9.9
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch... 25 9.9
>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 225 bits (550), Expect = 3e-60
Identities = 103/137 (75%), Positives = 120/137 (87%)
Frame = +3
Query: 27 IRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAI 206
+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAI
Sbjct: 7 LNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAI 66
Query: 207 RKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVA 386
RKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRFKVVKVA
Sbjct: 67 RKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVA 126
Query: 387 NVSLLALYKEKKERPRS 437
V L AL+ EKKE+PR+
Sbjct: 127 GVGLSALFHEKKEKPRA 143
>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 225 bits (550), Expect = 3e-60
Identities = 103/137 (75%), Positives = 120/137 (87%)
Frame = +3
Query: 27 IRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAI 206
+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAI
Sbjct: 7 LNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAI 66
Query: 207 RKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVA 386
RKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRFKVVKVA
Sbjct: 67 RKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVA 126
Query: 387 NVSLLALYKEKKERPRS 437
V L AL+ EKKE+PR+
Sbjct: 127 GVGLSALFHEKKEKPRA 143
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 48.8 bits (111), Expect = 5e-07
Identities = 31/82 (37%), Positives = 49/82 (59%)
Frame = +3
Query: 135 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 314
G+ +G+ V+ K+PNSA+RK RV+L G+ VTA++P G ++ +E+ VL+
Sbjct: 47 GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103
Query: 315 AGFGRKGHAVGDIPGVRFKVVK 380
G GR D PGV++ VV+
Sbjct: 104 RG-GR----AQDCPGVQYHVVR 120
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 26.2 bits (55), Expect = 3.2
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -2
Query: 316 ATSTSSFSSMWFRQPS---RGTNAVTFFPFLMSCTRTHLRMA 200
++S S F S+WFRQ + AVT+F MS HL A
Sbjct: 154 SSSVSCFFSLWFRQTNIVWMVFIAVTYFASNMSFFNPHLAEA 195
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 4.3
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2
Query: 376 TTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSR 266
+++K P + P P P+ AT+TSS +++ PSR
Sbjct: 392 SSVKALPTLEP---PSSPSHATATSSLHTLFHTAPSR 425
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 25.8 bits (54), Expect = 4.3
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -1
Query: 530 HNIYYVLGFYIL*TYKQRASRQQVTYHNVHL*SWSLLFLFVESEERHVGYFYHLKTN--S 357
HN Y++ Y T K++ R +++HN W+ L F+ + YFY ++ S
Sbjct: 179 HNNPYIIRGYRFYTSKRKCFRSILSWHNETFNIWTHLSAFIVF-FAVLAYFYPSSSSWVS 237
Query: 356 GNVTDGV 336
NV++ +
Sbjct: 238 SNVSNRI 244
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +3
Query: 72 WADKEFKKAHMGTKWKANPFGGASHAKGIV 161
W D EF H K+ PF +H K V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -3
Query: 78 PPIAVHDGGSRAYAP 34
PP AV GGSR YAP
Sbjct: 781 PPPAVSAGGSRYYAP 795
>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 25.4 bits (53), Expect = 5.7
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -1
Query: 434 SWSLLFLFVESEERHVGYFYHLKTNSGNVTD--GVTFTTESRH 312
SW L+++ V S+E+ GY L N+ D G+ ES H
Sbjct: 129 SWYLVYVGVSSKEQGKGYLRKLIEPIFNICDQEGLPIYLESSH 171
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -1
Query: 131 ERVSLPFRTHVGFLEFFVRPSLFTTVVHVLTRRSYSR 21
E + LP R + L FF +PSL + + +++ ++ S+
Sbjct: 200 EPLPLPARPQISDLSFFRKPSLPSALQNIVIEKNASQ 236
>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 548
Score = 24.6 bits (51), Expect = 9.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 95 FLEFFVRPSLFTTVVHVLTRRSYSRGL 15
FL FF PSL T+V V + + R L
Sbjct: 220 FLRFFESPSLNTSVAKVYINQKFIRKL 246
>SPBC56F2.12 |ilv5||acetohydroxyacid
reductoisomerase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +3
Query: 264 PRDGCLNHIEENDEVLVAGFGRKGHAVG 347
PR+ +++ + ND + + G+G +GH G
Sbjct: 74 PREKLVDYFK-NDTLAIIGYGSQGHGQG 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,377,787
Number of Sequences: 5004
Number of extensions: 49816
Number of successful extensions: 119
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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