Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5860
         (819 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr...    32   0.43 
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ...    32   0.43 
U41110-4|AAA82419.1|  575|Caenorhabditis elegans Hypothetical pr...    32   0.57 
Z79598-1|CAB01867.3|  586|Caenorhabditis elegans Hypothetical pr...    31   0.99 
Z81098-2|CAB03182.1|  961|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p...    29   3.0  
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z34802-6|CAB54282.1|  594|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z34802-5|CAA84337.1|  610|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr...    29   5.3  
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr...    29   5.3  
Z79598-2|CAB01864.1|  738|Caenorhabditis elegans Hypothetical pr...    29   5.3  
AF304125-1|AAG50238.1|  542|Caenorhabditis elegans 1D304 protein.      29   5.3  
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.    29   5.3  
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.    29   5.3  
AC024201-8|AAF36020.1|  542|Caenorhabditis elegans Hypothetical ...    29   5.3  
U40030-7|AAT81189.1|  525|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z82288-3|CAB05320.2|  484|Caenorhabditis elegans Hypothetical pr...    28   9.2  
U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical pr...    28   9.2  
AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of...    28   9.2  
AF022974-5|AAC48036.3|  347|Caenorhabditis elegans Seven tm rece...    28   9.2  

>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +3

Query: 471 LHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETF 608
           L  +  + +  + I  I P AF G+H+L+ + L  NN+  L  +TF
Sbjct: 310 LKNLTRLDLSKNIITEIQPKAFLGLHNLHTLVLYGNNITDLKSDTF 355


>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +3

Query: 471 LHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETF 608
           L  +  + +  + I  I P AF G+H+L+ + L  NN+  L  +TF
Sbjct: 310 LKNLTRLDLSKNIITEIQPKAFLGLHNLHTLVLYGNNITDLKSDTF 355


>U41110-4|AAA82419.1|  575|Caenorhabditis elegans Hypothetical
           protein ZK682.5 protein.
          Length = 575

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 11/45 (24%), Positives = 26/45 (57%)
 Frame = +3

Query: 477 QVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFA 611
           Q+  + +  + +  +  + F G++DLY+++L  N + ++ P  FA
Sbjct: 331 QIQAIVLNKNRLSQVRADFFEGLNDLYSIDLQGNRIDNVQPLGFA 375


>Z79598-1|CAB01867.3|  586|Caenorhabditis elegans Hypothetical
           protein C44H4.1 protein.
          Length = 586

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +3

Query: 471 LHQVATVKIVNSTIGYIAPNAFHGVHD---LYAVNLSNNNLKSLHP 599
           L Q+  + + ++ I Y+  NAF   H    L  ++LS NNL ++HP
Sbjct: 131 LKQLKILSLPDNLIEYVQDNAFLSYHSRDSLLKLDLSANNLTAIHP 176


>Z81098-2|CAB03182.1|  961|Caenorhabditis elegans Hypothetical
           protein K07A12.2 protein.
          Length = 961

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
 Frame = +3

Query: 303 PRDCICSVSQGYRQAKCSFLEIGTQKFGDDILDLV-VENADPRYPINLDDFMFKKLGLHQ 479
           P  C C +S+      C+  ++ T      I   V     D  + +N  D   + L  + 
Sbjct: 27  PEKCDCKISKSMIILSCNGEDVKT------IAQTVGTSQIDELHILNGTDVKIESLPFNG 80

Query: 480 VATVKIVNSTIGYIAPNAFHGVH-DLYAVNLSNNNLKSL 593
           + T+ I+NST+   +P A+  V   +  + ++ N LK++
Sbjct: 81  LRTIAILNSTLQSFSPTAWRHVEATIEHITINGNELKTV 119


>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
            protein F10F2.1 protein.
          Length = 2507

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +3

Query: 381  FGDDILDLVVENADPRYPI-NLDDFMFKKLGLHQVATVKIV-NSTIGYIAPNAFHGVHDL 554
            FG     L+ E   PR+ I ++   MF++        +K + NS + Y+A N FH +   
Sbjct: 2091 FGQTPSQLLTEAHPPRHSIMSMAPTMFRRHDEDLCMMMKYISNSPVVYLAANTFHQLPQP 2150

Query: 555  YAVNLSNNNLKSLH 596
              V ++ N + SL+
Sbjct: 2151 TVVGVAQNLVFSLN 2164


>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical protein
            F10F2.1 protein.
          Length = 2507

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +3

Query: 381  FGDDILDLVVENADPRYPI-NLDDFMFKKLGLHQVATVKIV-NSTIGYIAPNAFHGVHDL 554
            FG     L+ E   PR+ I ++   MF++        +K + NS + Y+A N FH +   
Sbjct: 2091 FGQTPSQLLTEAHPPRHSIMSMAPTMFRRHDEDLCMMMKYISNSPVVYLAANTFHQLPQP 2150

Query: 555  YAVNLSNNNLKSLH 596
              V ++ N + SL+
Sbjct: 2151 TVVGVAQNLVFSLN 2164


>Z34802-6|CAB54282.1|  594|Caenorhabditis elegans Hypothetical
           protein M88.6b protein.
          Length = 594

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 468 GLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSL 593
           G+  +  + + N  +  I   AF G++ L  + LSNNNL+++
Sbjct: 197 GMKNLKKLTLQNCNLEIIQKGAFRGLNSLEQLILSNNNLENI 238


>Z34802-5|CAA84337.1|  610|Caenorhabditis elegans Hypothetical
           protein M88.6a protein.
          Length = 610

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 468 GLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSL 593
           G+  +  + + N  +  I   AF G++ L  + LSNNNL+++
Sbjct: 197 GMKNLKKLTLQNCNLEIIQKGAFRGLNSLEQLILSNNNLENI 238


>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
           protein C12C8.3b protein.
          Length = 1143

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/29 (55%), Positives = 16/29 (55%)
 Frame = +2

Query: 527 QCFPWCP*PLRSQPIQQQPKEPSS*DVCE 613
           Q FP  P PL SQP QQQP  P     CE
Sbjct: 348 QTFP-IPSPLGSQPQQQQPMGPIQCQGCE 375


>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
           protein C12C8.3a protein.
          Length = 1147

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/29 (55%), Positives = 16/29 (55%)
 Frame = +2

Query: 527 QCFPWCP*PLRSQPIQQQPKEPSS*DVCE 613
           Q FP  P PL SQP QQQP  P     CE
Sbjct: 348 QTFP-IPSPLGSQPQQQQPMGPIQCQGCE 375


>Z79598-2|CAB01864.1|  738|Caenorhabditis elegans Hypothetical
           protein C44H4.2 protein.
          Length = 738

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 468 GLHQVATVKIVNSTIGYIAPNA-FHGVHDLYAVNLSNNNLKSLHPETF 608
           GL  +  + + N++I  I     F  ++ LY +NL +N + S+H  TF
Sbjct: 97  GLPNLLRLDLSNNSIVEIQEQEIFPNLNKLYDINLGSNKIFSIHTSTF 144


>AF304125-1|AAG50238.1|  542|Caenorhabditis elegans 1D304 protein.
          Length = 542

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +3

Query: 489 VKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHP 599
           + I +S + +I P+AF+ +  L  ++LSNN L+ + P
Sbjct: 314 LSISSSALTHIHPSAFNPIPPLSHLDLSNNELRYVAP 350


>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
          Length = 1147

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/29 (55%), Positives = 16/29 (55%)
 Frame = +2

Query: 527 QCFPWCP*PLRSQPIQQQPKEPSS*DVCE 613
           Q FP  P PL SQP QQQP  P     CE
Sbjct: 348 QTFP-IPSPLGSQPQQQQPMGPIQCQGCE 375


>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
          Length = 1143

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/29 (55%), Positives = 16/29 (55%)
 Frame = +2

Query: 527 QCFPWCP*PLRSQPIQQQPKEPSS*DVCE 613
           Q FP  P PL SQP QQQP  P     CE
Sbjct: 348 QTFP-IPSPLGSQPQQQQPMGPIQCQGCE 375


>AC024201-8|AAF36020.1|  542|Caenorhabditis elegans Hypothetical
           protein Y71F9B.8 protein.
          Length = 542

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +3

Query: 489 VKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHP 599
           + I +S + +I P+AF+ +  L  ++LSNN L+ + P
Sbjct: 314 LSISSSALTHIHPSAFNPIPPLSHLDLSNNELRYVAP 350


>U40030-7|AAT81189.1|  525|Caenorhabditis elegans Hypothetical
           protein T13C2.2 protein.
          Length = 525

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 640 FQTIPSNFLQLGPKITS*TLPLYKSLMVHTVTCSTSRQILSKYAWFD 780
           F ++ S+ +Q G KI    LP     + HT   S+   ILS   W D
Sbjct: 296 FDSLISSIVQKGAKIAEGPLPQTVGAVDHTKLSSSEMGILSPAMWSD 342


>Z82288-3|CAB05320.2|  484|Caenorhabditis elegans Hypothetical
           protein ZK896.5 protein.
          Length = 484

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 208 LTVLLIDSPNTSAHAARSSSNYPGPCPHVVANSLTSVQPLNNG 80
           L V +    N   +   + SNYPGP  + + +S+T    LN G
Sbjct: 406 LNVTITYKQNIVLNNVYTVSNYPGPPVYALGDSITVSYKLNGG 448


>U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical
           protein C56E6.6 protein.
          Length = 1102

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/53 (22%), Positives = 30/53 (56%)
 Frame = +3

Query: 453 MFKKLGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFA 611
           MF      ++ ++ + ++ I  I+  +F  + +L  + LS+NN++++   TF+
Sbjct: 433 MFGSSSSSELKSLNLAHNKIHSISSRSFSDLDNLQQLRLSHNNIRTITSMTFS 485


>AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of
           constitutive dauerformation protein 2 protein.
          Length = 1446

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 476 PGCYCKNREQHDWLYRPQCFPWCP 547
           P CYC  RE+H  L + +C  W P
Sbjct: 153 PDCYCGKREKHCDLSKEKCH-WTP 175


>AF022974-5|AAC48036.3|  347|Caenorhabditis elegans Seven tm
           receptor protein 208 protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = -2

Query: 416 VFDHEIKDIIAELLCTDFEEAALGLSVSLRYRAYAVSGTGPVLVVQNLLVF 264
           +  +++  ++  L C  F    +  SV   YR +AVSG   +   + + +F
Sbjct: 83  LLSYDVLLLLVSLCCAFFGSLMVMFSVQFIYRFWAVSGNNSIKTFEGVRIF 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,186,887
Number of Sequences: 27780
Number of extensions: 376237
Number of successful extensions: 1149
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)