Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5859
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80452-4|AAB37860.1|  226|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U22831-9|AAN63388.1|  412|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U22831-8|AAK20070.2|  545|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U97004-3|AAB52277.1|  365|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U97004-2|AAB52275.2|  218|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    27   9.9  
AC024791-2|AAK95891.1|  604|Caenorhabditis elegans Temporarily a...    27   9.9  

>U80452-4|AAB37860.1|  226|Caenorhabditis elegans Hypothetical
           protein C16C8.4 protein.
          Length = 226

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
 Frame = -2

Query: 648 RKTDYRLNPHRAPPLRLHETHGTAQCAPKVQIFMKTV-IEHYVKICEFKYYLSIKSEVLH 472
           R   Y L+  R+           A   P+ QIF+K + + +  KI        IK+++ H
Sbjct: 125 RNMKYDLHSLRSDMDSRKNCENRAAPKPEFQIFVKVLGVSYAFKIHREDTVFDIKNDIEH 184

Query: 471 QRHIPFHHPLL*TQLKYLITECS 403
           +  IP H   L    K L   CS
Sbjct: 185 RHDIPQHSYWLSFSGKRLEDHCS 207


>U22831-9|AAN63388.1|  412|Caenorhabditis elegans Hypothetical
           protein F47D12.9b protein.
          Length = 412

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 600 LHETHGTAQCAPKVQIFMKTVIEHY-VKICEF 508
           +HE+     C PK    +KT IEHY V  CEF
Sbjct: 8   IHESR-LLNCNPKPSFTIKTPIEHYDVSGCEF 38


>U22831-8|AAK20070.2|  545|Caenorhabditis elegans Hypothetical
           protein F47D12.9a protein.
          Length = 545

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 600 LHETHGTAQCAPKVQIFMKTVIEHY-VKICEF 508
           +HE+     C PK    +KT IEHY V  CEF
Sbjct: 141 IHESR-LLNCNPKPSFTIKTPIEHYDVSGCEF 171


>U97004-3|AAB52277.1|  365|Caenorhabditis elegans Hypothetical
           protein R08E5.3 protein.
          Length = 365

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = -2

Query: 528 YVKICEFKYYLSIKSEVLHQRHI 460
           Y +  +F+Y++   S+ LH++H+
Sbjct: 134 YAQFTKFQYFMGTMSQALHEKHV 156


>U97004-2|AAB52275.2|  218|Caenorhabditis elegans Hypothetical
           protein R08E5.1 protein.
          Length = 218

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -2

Query: 528 YVKICEFKYYLSIKSEVLHQRHI 460
           Y +I +F+Y++   S+ LH++H+
Sbjct: 71  YSEISKFQYFMGKMSQALHEKHV 93


>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
            protein protein16, isoform d protein.
          Length = 1030

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -3

Query: 665  ATKSYPAKPTTD*TPIEPHHSDSTKPTVPHSARRR 561
            A  S P  P    TP   HH  S +PT P + R R
Sbjct: 907  AASSIPLSPQP--TPQHHHHHHSQRPTTPGATRAR 939


>AC024791-2|AAK95891.1|  604|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 63 protein.
          Length = 604

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 644 KPTTD*TPIEPHHSDSTKPTVPHSARRR 561
           KP    +  EP + ++TKP  P+S R+R
Sbjct: 363 KPLISSSLAEPENKENTKPNSPYSLRKR 390


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,082,193
Number of Sequences: 27780
Number of extensions: 293803
Number of successful extensions: 749
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)