Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5857
(549 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ... 212 3e-56
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 29 0.45
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 25 5.6
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.3
SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.3
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 25 9.7
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar... 25 9.7
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa... 25 9.7
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 25 9.7
>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 212 bits (518), Expect = 3e-56
Identities = 93/151 (61%), Positives = 116/151 (76%)
Frame = -3
Query: 517 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV*PVRRGYWGNKIGKPH 338
GQRTRFKAFV IGD++GH+GLG+KC+KEVATAIRGAII+ KLS+ P+RRGYWG +G PH
Sbjct: 92 GQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPH 151
Query: 337 PVPCKVTGKCGSVTVRLIPAPGGTGIVSAPVPKKLLQMAGVQDCYTSAGGSTGTLGNFXX 158
VP KV+GKCGSVTVRL+PAP G G+V+APV K+ LQ+AG++DCYT + GST TLGNF
Sbjct: 152 TVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNFVK 211
Query: 157 XXXXXXXXXXXYLTPDLWRDIPLTKSPYSEF 65
LTP+LW + P ++P E+
Sbjct: 212 AAFAAASLTYGILTPNLWAERPFGQTPIEEY 242
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 29.1 bits (62), Expect = 0.45
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -1
Query: 240 RSFFRWLVYRTATPQLVVQL 181
RS F+WL+ TATP+L+V L
Sbjct: 69 RSVFQWLIALTATPRLLVLL 88
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 383 LNRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALS-RHV 526
L+R LS + GSG L N+T+ +A+G T +S +H+
Sbjct: 372 LSRNLSSSLQQTGGSGRLFVRLMEIRNLTIPLASGMTTRFTYTISGKHI 420
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 341 WLSDLVTPVTSSNWLNRQLSKDNSASN 421
++S++VTP T++NW N S +S S+
Sbjct: 192 YVSEVVTPTTTNNW-NSSSSFTSSTSS 217
>SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 95
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 141 LPRHMPTSLLTCGGT 97
LPR +PTSLLT G+
Sbjct: 27 LPRSIPTSLLTAAGS 41
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 24.6 bits (51), Expect = 9.7
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Frame = -1
Query: 354 RSESHTPSLARSPASV--VL*QSG*FLPLVVLELCL-RQFLRSFFRWLVYRTATPQLVVQ 184
R ++ TP SP ++ + Q+G +P L L R F + + YRT T +L +
Sbjct: 212 RLKTGTPPRLSSPINISKMTEQTGDEIPETFSFLNLERDFSPALPQRSCYRTYTTELTHE 271
Query: 183 LAPWEILLKPHMLP----LPRHMPT 121
+ + PHML PR+ P+
Sbjct: 272 IVRKNLAFAPHMLAGDILSPRYCPS 296
>SPAC24C9.09 |||mitochondrial threonine-tRNA
ligase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 486 ATNALKRVRCPGTCFVF 536
AT LK + CPG C V+
Sbjct: 137 ATYGLKPMNCPGHCIVY 153
>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 422 GSGDFLAALHTQTNMTVVVANGNKCLETCA 511
G+GD H +T T +V +K L+ CA
Sbjct: 117 GTGDARLLKHKETGKTRLVMRRDKTLKVCA 146
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 24.6 bits (51), Expect = 9.7
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = +1
Query: 67 TLSMET*SAGCPSTSQE*GRHMSWQWQHMWL*QNFPRCQLNHQLRCSSPVHQP 225
TLS + S G P + GRH S + W+ Q F + + S H P
Sbjct: 461 TLSFTSGSEGIPKGVK--GRHFSLAYYFDWMAQEFNLSESDRFTMLSGIAHDP 511
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,377,212
Number of Sequences: 5004
Number of extensions: 48547
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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