Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5857
(549 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 235 1e-62
07_01_0756 + 5819367-5820038,5820847-5821005 229 1e-60
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 101 3e-22
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 39 0.002
07_03_0681 + 20659789-20659839,20660030-20660170,20661294-206613... 30 1.1
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 30 1.4
02_01_0634 + 4754175-4755092,4755546-4756172 28 5.6
02_01_0632 + 4740052-4740969,4742383-4743009 27 7.5
05_06_0012 + 24844413-24844913 27 9.9
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 235 bits (576), Expect = 1e-62
Identities = 107/151 (70%), Positives = 123/151 (81%)
Frame = -3
Query: 517 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV*PVRRGYWGNKIGKPH 338
GQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIILAKLSV PVRRGYWGNKIG+PH
Sbjct: 102 GQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGQPH 161
Query: 337 PVPCKVTGKCGSVTVRLIPAPGGTGIVSAPVPKKLLQMAGVQDCYTSAGGSTGTLGNFXX 158
VPCKVTGKCGSVTVR++PAP G+GIV+A VPKK+LQ AG++D +TS+ GST TLGNF
Sbjct: 162 TVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 221
Query: 157 XXXXXXXXXXXYLTPDLWRDIPLTKSPYSEF 65
+LTPD WRD KSP+ E+
Sbjct: 222 ATFDCLMKTYGFLTPDFWRDTKFVKSPFQEY 252
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 229 bits (560), Expect = 1e-60
Identities = 104/151 (68%), Positives = 122/151 (80%)
Frame = -3
Query: 517 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV*PVRRGYWGNKIGKPH 338
GQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIILAKLSV PVRRGYWGNKIGKPH
Sbjct: 105 GQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPH 164
Query: 337 PVPCKVTGKCGSVTVRLIPAPGGTGIVSAPVPKKLLQMAGVQDCYTSAGGSTGTLGNFXX 158
VPCKVTGKCGSVTVR++PAP G+GIV+A VPKK+LQ AG++D +TS+ GST TLGNF
Sbjct: 165 TVPCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 224
Query: 157 XXXXXXXXXXXYLTPDLWRDIPLTKSPYSEF 65
+LTPD WR+ K+P+ E+
Sbjct: 225 ATFDCLMKTYGFLTPDFWRETRFIKTPFQEY 255
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 101 bits (243), Expect = 3e-22
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Frame = -3
Query: 493 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV*PVRRGYWGNKIG-KPHPVPCKVT 317
FV +GD + HI LGVKC+K AT + GAIILA G I KPH V CKV
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILAMFRC---AEGATRETISRKPHTVSCKVA 56
Query: 316 GKCGSVTVRLIPAPGGTGIVSAPVPKKLLQMAGVQDCYTSAGGSTGTLGNF 164
K GSVTVR++ P G+ +V+ VPKK+L+ AG++D +TS+ GST TL NF
Sbjct: 57 DKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLSNF 107
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = -3
Query: 517 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGA 410
G++ F+A V +GD GH+G+GV +KEV AI A
Sbjct: 187 GRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKA 222
>07_03_0681 +
20659789-20659839,20660030-20660170,20661294-20661399,
20661625-20661806,20661888-20662113,20662198-20662624,
20662844-20663189,20663271-20663849
Length = 685
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 320 DLARDGVWLSDLVTPVTSSNWLNRQLSKDNSASNGSGDFLAALHTQTNMT 469
DL D ++ + + + W NR +++ + G G ALH TNM+
Sbjct: 354 DLDEDNRGMAQIRDDLAGAMWNNRGMAEAGGGNGGHGGHHGALHWTTNMS 403
>09_06_0198 -
21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +2
Query: 329 RDGVWLSDLVTPVTSSNWLNRQLSKDNSASNGSGDFLAALHTQTNMTVVVANG 487
R VW++D TPVT+S+ LS NS++ D + TN+T A G
Sbjct: 105 RTVVWVADRGTPVTNSSSSAPTLSLTNSSNLVLSDADGGVRWTTNITDDAAGG 157
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 329 RDGVWLSDLVTPVTSSNWLNRQLSKDNSASNGSGDFLAALHTQTNMT 469
R VW++D TPVT+++ LS NS++ D + TN+T
Sbjct: 1805 RTVVWVADRGTPVTNTSSSAPTLSLTNSSNLVLSDADGRVRWSTNIT 1851
>02_01_0634 + 4754175-4755092,4755546-4756172
Length = 514
Score = 27.9 bits (59), Expect = 5.6
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -1
Query: 549 IMPVQKQNTCRDSAHVSRHLLPLATTTVILVW 454
++P+ CR++ V + +P+ TT ++ VW
Sbjct: 375 VVPLLLPRECRETCEVMGYDIPIGTTVLVNVW 406
>02_01_0632 + 4740052-4740969,4742383-4743009
Length = 514
Score = 27.5 bits (58), Expect = 7.5
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -1
Query: 549 IMPVQKQNTCRDSAHVSRHLLPLATTTVILVW 454
++P+ CR++ V + +P+ TT ++ VW
Sbjct: 375 VVPLLLPRECRETCEVMGYDIPIGTTMLVNVW 406
>05_06_0012 + 24844413-24844913
Length = 166
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -3
Query: 304 SVTVRLIPAPGGTGIVSAPVPKKLLQMAGVQDCYTSAGGSTGT 176
++++RL+P+P G +V +L A +T+ GG GT
Sbjct: 28 TLSLRLLPSPCGLLLVFLHALTAVLAAAACSGSFTAPGGGGGT 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,877,412
Number of Sequences: 37544
Number of extensions: 391852
Number of successful extensions: 1096
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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