Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5857
         (549 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   237   5e-63
Z80220-3|CAB02306.1|  601|Caenorhabditis elegans Hypothetical pr...    31   0.55 
Z70681-3|CAA94579.2|  403|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AF067948-6|AAC17701.1|  337|Caenorhabditis elegans Seven tm rece...    28   5.1  
Z81454-2|CAB03804.2|  346|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z69884-8|CAA93752.2|  582|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AY090484-1|AAM11893.1|  582|Caenorhabditis elegans low-affinity ...    27   8.9  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  237 bits (579), Expect = 5e-63
 Identities = 112/148 (75%), Positives = 121/148 (81%)
 Frame = -3

Query: 517 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV*PVRRGYWGNKIGKPH 338
           GQRTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRGAI+ AKL+V PVRRGYWGNKIG PH
Sbjct: 115 GQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKIGLPH 174

Query: 337 PVPCKVTGKCGSVTVRLIPAPGGTGIVSAPVPKKLLQMAGVQDCYTSAGGSTGTLGNFXX 158
            VPCKVTGKC SV VRLIPAP GTGIVSAPVPKKLL MAG++DCYT+A GST TLGNF  
Sbjct: 175 TVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLGNFAK 234

Query: 157 XXXXXXXXXXXYLTPDLWRDIPLTKSPY 74
                      YLTPDLW++  L KSPY
Sbjct: 235 ATYAALQRTYSYLTPDLWKEEALEKSPY 262


>Z80220-3|CAB02306.1|  601|Caenorhabditis elegans Hypothetical
           protein T08G11.3 protein.
          Length = 601

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = +2

Query: 251 RRHNSSTTRGRNQPDCYRTTLAGDLARDGVWLSDLVTPVTSSNWLNRQLSKDNSASNGSG 430
           R  N ++T   N P    +T   D  R     S L  P +SSN L+   SK ++ +    
Sbjct: 419 RNTNDTSTHSINAPFEGESTNHADFQRKQAEKSKLTRPHSSSNLLSPNASKFDATTTTRA 478

Query: 431 DFLAALHTQ 457
           DF+   H +
Sbjct: 479 DFIQKPHVR 487


>Z70681-3|CAA94579.2|  403|Caenorhabditis elegans Hypothetical
           protein C30F2.3 protein.
          Length = 403

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 368 TSSNWLNRQLSKDNSASNGSG 430
           TS+NW N QL   NS + GSG
Sbjct: 309 TSTNWQNNQLGVSNSGAPGSG 329


>AF067948-6|AAC17701.1|  337|Caenorhabditis elegans Seven tm
           receptor protein 30 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -1

Query: 240 RSFFRWLVYRTATPQLVVQLAPWEILLKPHMLPLPRHMPTSLLTC 106
           R FF+ L+Y+  +P     + P  ++L      L  ++PT L+ C
Sbjct: 241 RQFFKSLIYQITSPTFTFYI-PAILILTVPFFDLKFNLPTGLIVC 284


>Z81454-2|CAB03804.2|  346|Caenorhabditis elegans Hypothetical
           protein B0391.4 protein.
          Length = 346

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = -1

Query: 255 LRQFLRSFFRWLVYRTATPQLVVQLAPWEILLKPHMLPLPRHMPTSLLTCGGT 97
           LR+  + FF+ LV +  TP +++   P  I++   +  L   +P+ ++ C  T
Sbjct: 243 LRKHHKQFFKTLVLQITTPTIIL-FIPITIIIFLPLFHLDVSLPSGVMLCSFT 294


>Z69884-8|CAA93752.2|  582|Caenorhabditis elegans Hypothetical
           protein F31F6.6 protein.
          Length = 582

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 423 AVATSLLHFTPKPI*PLLSPMATNALKRVRCPGTCFVFV 539
           A+  ++  F P  + PL   M +  + R   P TCF+F+
Sbjct: 59  ALPLAITAFIPMILFPLFGIMRSEEVARAYLPDTCFLFM 97


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical
           protein F47A4.2 protein.
          Length = 3498

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 355 KIGKPHPVPCKVTGKCGSVTVRLIPAPGGTGI 260
           KIGK    P +++G+ GS+T       GG GI
Sbjct: 470 KIGKRSVTPERISGRYGSMTYPFWIQQGGVGI 501


>AY090484-1|AAM11893.1|  582|Caenorhabditis elegans low-affinity
           dicarboxylate transporterINDY1 protein.
          Length = 582

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 423 AVATSLLHFTPKPI*PLLSPMATNALKRVRCPGTCFVFV 539
           A+  ++  F P  + PL   M +  + R   P TCF+F+
Sbjct: 59  ALPLAITAFIPMILFPLFGIMRSEEVARAYLPDTCFLFM 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,684,603
Number of Sequences: 27780
Number of extensions: 299280
Number of successful extensions: 951
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)